SRR3548372_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548372_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	571733
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13274	2.3217131073420636	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3308	0.5785917552423946	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2770	0.48449188694722883	No Hit
CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT	2504	0.43796667325482347	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1807	0.31605662083525005	No Hit
AAAGCCGGGACCCAAGATTATTGCATAATCTTCACCAGCTTGCTTTGATTC	1685	0.29471798899136487	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGT	1151	0.2013177479697691	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCC	1094	0.19134805932139654	No Hit
AATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCT	944	0.16511203656252132	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGA	30	2.1635806E-6	45.000004	22
TGTTTCG	30	2.1635806E-6	45.000004	44
GTTTCGA	30	2.1635806E-6	45.000004	45
CCGATTG	30	2.1635806E-6	45.000004	33
ACTTCGC	30	2.1635806E-6	45.000004	24
CGATTGT	30	2.1635806E-6	45.000004	34
CTTGGCG	30	2.1635806E-6	45.000004	1
CTAACCG	30	2.1635806E-6	45.000004	1
TCGGACG	30	2.1635806E-6	45.000004	10
ACGGCCG	30	2.1635806E-6	45.000004	29
GTCCGTT	30	2.1635806E-6	45.000004	10
TACTCGC	125	0.0	45.000004	45
ACGTCCA	60	0.0	45.000004	19
TTACGTC	60	0.0	45.000004	17
TTAAACG	30	2.1635806E-6	45.000004	1
TTACGCA	30	2.1635806E-6	45.000004	25
CAGTCGA	60	0.0	45.000004	34
CGTCCAA	60	0.0	45.000004	20
CTTAGAC	30	2.1635806E-6	45.000004	44
AGTCGAG	60	0.0	45.000004	35