SRR3548371_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548371_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	615846
Sequences flagged as poor quality	0
Sequence length	46
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16336	2.652611204749239	No Hit
CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTT	4663	0.7571698119335029	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4205	0.6828005702724382	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3420	0.5553336386044563	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2210	0.3588559477531721	No Hit
AAAGCCGGGACCCAAGATTATTGCATAATCTTCACCAGCTTGCTTT	2155	0.34992514362356825	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTAT	989	0.16059209607596706	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGT	899	0.14597805295479713	No Hit
AATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGT	882	0.14321762258746504	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGG	25	7.790432E-5	40.000004	2
CTTCGTT	25	7.790432E-5	40.000004	23
TCGCCAA	25	7.790432E-5	40.000004	29
GTGTTCG	25	7.790432E-5	40.000004	9
TTGATCG	25	7.790432E-5	40.000004	1
AGCCGTC	25	7.790432E-5	40.000004	37
CGGAACG	25	7.790432E-5	40.000004	1
GTCGCCA	25	7.790432E-5	40.000004	28
GTCGACT	25	7.790432E-5	40.000004	34
CGAGTCT	25	7.790432E-5	40.000004	18
GCGCGAC	50	7.8216544E-11	40.000004	9
CCTACGC	25	7.790432E-5	40.000004	12
TTCGTTG	25	7.790432E-5	40.000004	24
TTCGTCG	25	7.790432E-5	40.000004	31
ATCGTCG	25	7.790432E-5	40.000004	14
GTTACGC	25	7.790432E-5	40.000004	24
GTTACCG	25	7.790432E-5	40.000004	1
TCAATCG	25	7.790432E-5	40.000004	1
CCACTAC	25	7.790432E-5	40.000004	30
TCCAGCG	25	7.790432E-5	40.000004	1