SRR3548370_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548370_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	559380
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	20403	3.647431084414888	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGT	6244	1.1162358325288713	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCC	6085	1.0878115055954807	No Hit
AATCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCT	5722	1.0229182308984948	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4925	0.8804390575279774	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3717	0.6644856805749223	No Hit
CTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGCT	2467	0.44102399084700916	Illumina Single End Adapter 2 (95% over 21bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1989	0.3555722406950553	No Hit
AATGACTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTT	1565	0.27977403553934715	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCT	1249	0.22328292037613073	No Hit
AACTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTG	733	0.1310379348564482	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTCTAGGGATCGTAT	626	0.11190961421573885	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	617	0.11030069004969788	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGG	588	0.1051163788480103	No Hit
AAACTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCT	587	0.10493760949622796	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCCTA	40	6.8048394E-9	45.000004	20
GTGCACC	20	7.030177E-4	45.000004	13
CTATGCG	20	7.030177E-4	45.000004	1
TCCATCG	20	7.030177E-4	45.000004	31
GCCTTAC	20	7.030177E-4	45.000004	35
GAAGCGA	40	6.8048394E-9	45.000004	44
CGTATAG	20	7.030177E-4	45.000004	17
TACTTGC	20	7.030177E-4	45.000004	23
GATCGAC	20	7.030177E-4	45.000004	16
CACGGCA	20	7.030177E-4	45.000004	27
GCGCGTT	20	7.030177E-4	45.000004	11
GCGAAGT	20	7.030177E-4	45.000004	17
GGGTCGA	20	7.030177E-4	45.000004	7
TAGGTTA	20	7.030177E-4	45.000004	13
TTAGACT	20	7.030177E-4	45.000004	41
CTATACG	20	7.030177E-4	45.000004	1
CGGTTAG	20	7.030177E-4	45.000004	28
GCTATCG	20	7.030177E-4	45.000004	18
ATTAACG	20	7.030177E-4	45.000004	1
GTTAGAA	20	7.030177E-4	45.000004	9