SRR3548368_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548368_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	747378
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16208	2.1686482609870774	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4093	0.5476479104281903	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3169	0.4240156921932409	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCC	3048	0.40782575885294997	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGT	3005	0.40207231146755723	No Hit
AATCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCT	2451	0.327946500967382	No Hit
CTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGCT	2236	0.2991792640404186	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1922	0.25716571801685356	No Hit
GCAAACTAACCAACCATATAATTAACCTCCAACCCTCACACACACGAGAAC	1387	0.18558212845440997	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	898	0.12015338958331662	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCTA	20	7.0317014E-4	45.0	14
AACGTTC	25	3.8894916E-5	45.0	17
CTTAACA	20	7.0317014E-4	45.0	22
GTCATAT	20	7.0317014E-4	45.0	22
TTCTACG	20	7.0317014E-4	45.0	1
AACCGTA	20	7.0317014E-4	45.0	32
GTACCGT	20	7.0317014E-4	45.0	27
TGCCCGC	35	1.2111741E-7	45.0	19
TCCGCGT	20	7.0317014E-4	45.0	32
GTCGATT	20	7.0317014E-4	45.0	19
ATTAGCG	50	2.1827873E-11	45.0	1
ATTAGAC	20	7.0317014E-4	45.0	29
ATCTAGC	25	3.8894916E-5	45.0	43
GTCGAAG	20	7.0317014E-4	45.0	37
GGTCGAT	20	7.0317014E-4	45.0	18
CGAGTAT	20	7.0317014E-4	45.0	33
CGAGTAA	25	3.8894916E-5	45.0	16
GTTTCGA	20	7.0317014E-4	45.0	35
CGAAACG	45	3.8380676E-10	45.0	1
TCCGAAC	20	7.0317014E-4	45.0	39