SRR3548366_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548366_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	637677
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	22653	3.5524254442296024	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5565	0.8726988741949293	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4331	0.6791839755863862	No Hit
CTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGCT	3028	0.4748485518530542	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2581	0.40475036734898706	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGT	1091	0.17108975233543	No Hit
AATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCT	1055	0.16544426096597495	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCC	946	0.14835096765290265	No Hit
AAACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCT	816	0.12796447104098155	No Hit
GGAGGAGGAGGAAGAGGAGGAGGAGGAGAACAAGACGAACAAGAAAGAAGA	639	0.10020747180782748	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTATT	35	1.2107921E-7	45.000004	39
TTAGCGT	35	1.2107921E-7	45.000004	34
TTTCGTC	55	1.8189894E-12	45.000004	16
TAGCGTA	35	1.2107921E-7	45.000004	35
CGTTCAC	35	1.2107921E-7	45.000004	21
CGTTACG	35	1.2107921E-7	45.000004	1
TCTACGA	55	1.8189894E-12	45.000004	22
GCTTACG	35	1.2107921E-7	45.000004	1
ACGTGAC	35	1.2107921E-7	45.000004	21
CCGACCC	35	1.2107921E-7	45.000004	21
CGTCGCA	35	1.2107921E-7	45.000004	12
AACTCGC	35	1.2107921E-7	45.000004	1
CGGTCGG	35	1.2107921E-7	45.000004	13
CAATCCG	35	1.2107921E-7	45.000004	1
ATTTCGC	55	1.8189894E-12	45.000004	17
TCGCCCA	20	7.030922E-4	45.0	18
CTATGCG	40	6.8066583E-9	45.0	15
CTGTCGT	20	7.030922E-4	45.0	24
CTGTCCG	20	7.030922E-4	45.0	1
GTCGCAC	20	7.030922E-4	45.0	35