##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548366_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 637677 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.984733650421767 31.0 31.0 33.0 28.0 34.0 2 31.15344288722974 31.0 31.0 34.0 28.0 34.0 3 31.37916845048512 31.0 31.0 34.0 30.0 34.0 4 35.3588917273165 37.0 35.0 37.0 33.0 37.0 5 34.92754011827304 35.0 35.0 37.0 32.0 37.0 6 34.87292155746562 35.0 35.0 37.0 32.0 37.0 7 34.10258798733528 35.0 35.0 37.0 31.0 37.0 8 34.46949317601231 36.0 35.0 37.0 32.0 37.0 9 35.51813222054426 38.0 35.0 39.0 30.0 39.0 10 35.16939140034845 37.0 34.0 39.0 29.0 39.0 11 35.597319646153146 37.0 35.0 39.0 30.0 39.0 12 35.435123110916656 37.0 35.0 39.0 30.0 39.0 13 35.06380189343508 37.0 34.0 39.0 28.0 39.0 14 36.07328475074372 38.0 34.0 40.0 30.0 41.0 15 36.28850813185986 38.0 34.0 40.0 30.0 41.0 16 36.31039382006878 38.0 35.0 40.0 31.0 41.0 17 36.290996852638564 38.0 35.0 40.0 31.0 41.0 18 36.04409128759544 37.0 35.0 40.0 30.0 41.0 19 35.86078688740538 37.0 34.0 40.0 30.0 41.0 20 35.75483042355299 37.0 34.0 40.0 30.0 41.0 21 35.74631357254535 37.0 34.0 40.0 30.0 41.0 22 35.723952722146166 37.0 34.0 40.0 30.0 41.0 23 35.58667946311377 37.0 34.0 40.0 29.0 41.0 24 35.1867638318459 37.0 33.0 40.0 27.0 41.0 25 35.26115572617485 37.0 34.0 40.0 27.0 41.0 26 35.14038455205378 37.0 33.0 40.0 27.0 41.0 27 34.94848645944577 37.0 33.0 40.0 27.0 41.0 28 34.84034236768772 36.0 33.0 40.0 26.0 41.0 29 34.5831855312329 36.0 33.0 40.0 25.0 41.0 30 34.623869137510056 36.0 33.0 40.0 25.0 41.0 31 34.30956267828383 36.0 33.0 40.0 24.0 41.0 32 34.200891673997965 36.0 33.0 40.0 24.0 41.0 33 34.110236059948846 36.0 33.0 40.0 24.0 41.0 34 34.047122602822434 36.0 33.0 40.0 23.0 41.0 35 33.91097216929574 36.0 33.0 40.0 23.0 41.0 36 33.69394536732546 35.0 33.0 39.0 22.0 41.0 37 33.46193292215338 35.0 32.0 39.0 21.0 41.0 38 33.33222462155605 35.0 32.0 39.0 21.0 40.0 39 33.200604694853354 35.0 32.0 39.0 21.0 40.0 40 33.03348246839701 35.0 31.0 39.0 20.0 40.0 41 33.07004172959037 35.0 32.0 39.0 20.0 40.0 42 32.95816847714438 35.0 32.0 39.0 19.0 40.0 43 32.921668807248814 35.0 32.0 39.0 19.0 40.0 44 32.85369081839239 35.0 32.0 39.0 18.0 40.0 45 32.684043802740256 35.0 31.0 39.0 19.0 40.0 46 32.55546303222478 35.0 31.0 39.0 18.0 40.0 47 32.51134038078839 35.0 31.0 39.0 18.0 40.0 48 32.34434831427196 35.0 31.0 39.0 18.0 40.0 49 32.153858458122215 35.0 31.0 39.0 15.0 40.0 50 31.97736942056872 35.0 31.0 39.0 15.0 40.0 51 30.10101352252002 34.0 27.0 37.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 4.0 10 10.0 11 12.0 12 15.0 13 32.0 14 46.0 15 110.0 16 212.0 17 488.0 18 1053.0 19 2040.0 20 3315.0 21 4663.0 22 6422.0 23 8024.0 24 9053.0 25 9840.0 26 11014.0 27 12393.0 28 14753.0 29 17974.0 30 22114.0 31 27634.0 32 35563.0 33 47329.0 34 71841.0 35 73189.0 36 63199.0 37 75985.0 38 80378.0 39 38968.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.5392024488887 36.91790671452789 19.189338803187194 24.353552033396216 2 19.23465955334754 37.91167001475669 20.122726709603764 22.730943722292007 3 18.67199224685852 38.940403997635165 19.319969200708194 23.06763455479812 4 17.887739404118385 39.50432585776185 17.81215254744957 24.7957821906702 5 16.436220845349606 42.354044445698996 16.961565181118342 24.248169527833056 6 17.769340904564537 43.57927289207545 18.187734542723042 20.46365166063697 7 74.94358429110662 17.120893493100738 3.9491780321385277 3.9863441836541074 8 77.87108520457849 15.13979648003613 3.31421707227954 3.674901243105836 9 71.10543425590072 20.230304684032827 5.753696620702957 2.9105644393635024 10 36.19230425434821 44.274922884156084 9.288715133210074 10.244057728285636 11 28.83246533903528 33.008403941180255 25.17732331572254 12.981807404061932 12 30.682147858555346 31.083134564991365 24.005099760537075 14.22961781591621 13 20.825747204305628 41.97046467098547 21.646852560151927 15.556935564556978 14 14.695057215486838 45.21442673955624 24.86556673676485 15.224949308192079 15 12.910454665920208 37.708275506251596 33.128684271190586 16.25258555663761 16 14.285915910406052 35.09551073662685 32.323260835815 18.2953125171521 17 14.525222016789064 34.04842890679764 24.8268323932022 26.599516683211093 18 18.706649291098785 36.209868005275396 25.099384170983114 19.9840985326427 19 18.68155821834565 39.282269863896616 23.583883376693844 18.452288541063893 20 21.273622852949064 36.75465792242781 22.65598414244202 19.315735082181103 21 17.73217475304896 38.3258295343881 24.097623091314254 19.844372621248688 22 18.08219521795517 36.05806701511894 23.235117465425287 22.624620301500602 23 17.275046771327805 38.178733120372854 20.80034249314308 23.745877615156264 24 15.641774754303512 37.61512489865559 27.198252406782746 19.544847940258155 25 14.931070118571 37.95259982718523 25.438584110764538 21.677745943479223 26 17.833009501675612 41.72363124277651 21.033846288951928 19.40951296659594 27 15.325627237614029 40.63703097336112 23.395543511840632 20.64179827718422 28 15.707795639485195 38.93632669831278 27.50185438709566 17.85402327510636 29 16.760522960683858 37.055750795465414 26.315673922691268 19.868052321159457 30 18.922902974389856 37.87528795926464 23.45607572485757 19.74573334148793 31 21.14361973224689 40.9862673422438 18.60252133917328 19.26759158633603 32 21.931165778285873 39.186766968229996 20.224345554253954 18.657721699230176 33 20.570445539042492 38.687454620442644 20.15032688963221 20.591772950882657 34 18.287157918507333 39.563917155550534 20.73620343841788 21.412721487524248 35 18.822381864172613 37.5887792722648 22.167962777393573 21.420876086169017 36 23.68142492202165 35.59748901089423 22.798846437930177 17.922239629153943 37 18.78490207424762 39.51279409481603 22.517355965480956 19.184947865455396 38 18.65474213434074 38.27611784649596 22.100687338574232 20.968452680589074 39 19.391165119645212 36.71686449409341 23.744152603904485 20.1478177823569 40 20.21760232845155 35.77375379698499 21.5267290493463 22.481914825217157 41 17.62287176736812 32.750122711027686 25.878305160763208 23.748700360840992 42 21.353287008940264 33.273271577930515 22.894035695187377 22.47940571794184 43 20.436208299813227 33.47243196790852 24.61167644434408 21.479683287934172 44 18.877895862638923 35.741605860020044 22.737059671275585 22.643438606065452 45 19.16095452713521 39.18425786095469 22.037332379872566 19.617455232037535 46 19.740087850118478 36.87274278357225 24.78872532645838 18.598444039850897 47 20.064546784657438 34.350149056654075 23.447293849393972 22.13801030929452 48 20.11817895266726 32.52649852511538 27.310534957353017 20.044787564864343 49 20.82355173543973 31.413238990899785 25.788761394875465 21.97444787878503 50 18.992530701279804 33.0758361992043 23.97953823016982 23.95209486934608 51 18.231487100836315 34.17639337783862 24.371899880346948 23.22021964097811 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 26079.0 1 20479.0 2 14879.0 3 9693.0 4 4507.0 5 3999.0 6 3491.0 7 3619.5 8 3748.0 9 4287.5 10 4827.0 11 5031.0 12 5235.0 13 5541.0 14 5847.0 15 5707.0 16 5567.0 17 5416.0 18 5265.0 19 5013.5 20 4762.0 21 4696.5 22 4631.0 23 4834.0 24 5037.0 25 4721.5 26 4598.5 27 4791.0 28 6604.5 29 8418.0 30 8747.0 31 9076.0 32 11226.5 33 13377.0 34 15336.5 35 17296.0 36 18348.0 37 19400.0 38 21122.0 39 22844.0 40 25582.0 41 28320.0 42 35095.0 43 41870.0 44 49036.5 45 56203.0 46 58410.0 47 60617.0 48 58456.0 49 56295.0 50 53658.0 51 51021.0 52 44547.0 53 38073.0 54 32473.5 55 26874.0 56 23063.5 57 19253.0 58 17635.5 59 16018.0 60 15473.5 61 14929.0 62 13335.5 63 11742.0 64 9692.5 65 7643.0 66 6325.5 67 5008.0 68 4531.0 69 4054.0 70 3143.0 71 2232.0 72 2135.0 73 2038.0 74 1499.0 75 702.5 76 445.0 77 316.5 78 188.0 79 169.5 80 151.0 81 123.0 82 95.0 83 76.0 84 57.0 85 44.5 86 32.0 87 23.0 88 14.0 89 17.0 90 20.0 91 28.0 92 36.0 93 19.0 94 2.0 95 3.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 637677.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.35584152660115 #Duplication Level Percentage of deduplicated Percentage of total 1 80.46694067758612 26.03575580694392 2 8.516000373432222 5.5108471704649835 3 3.1930167895946546 3.0993823570770425 4 1.6079458375424576 2.0810576281152686 5 0.9832948736130822 1.5907666552272097 6 0.6636515700755736 1.2883803018147177 7 0.4835116845705887 1.0951099209558148 8 0.35589844063077014 0.9212314835690932 9 0.286314898096655 0.8337563522568292 >10 2.434737751553566 17.18006128153023 >50 0.6140906814738232 14.097872717910024 >100 0.3886774755030791 19.269507899758565 >500 0.002466227636440857 0.5640042812114092 >1k 0.002466227636440857 1.928849955495499 >5k 4.932455272881715E-4 0.8881391694797659 >10k+ 4.932455272881715E-4 3.6152770181896026 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 22653 3.5524254442296024 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5565 0.8726988741949293 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4331 0.6791839755863862 No Hit CTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGCT 3028 0.4748485518530542 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2581 0.40475036734898706 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGT 1091 0.17108975233543 No Hit AATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCT 1055 0.16544426096597495 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCC 946 0.14835096765290265 No Hit AAACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCT 816 0.12796447104098155 No Hit GGAGGAGGAGGAAGAGGAGGAGGAGGAGAACAAGACGAACAAGAAAGAAGA 639 0.10020747180782748 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.704576141212557E-4 0.0 0.0 0.6663248008004052 0.0 2 4.704576141212557E-4 0.0 0.0 0.8411782140488053 0.0 3 4.704576141212557E-4 0.0 0.0 1.0693501568976143 0.0 4 4.704576141212557E-4 0.0 0.0 2.299596817824698 0.0 5 4.704576141212557E-4 0.0 0.0 2.492013982000292 0.0 6 4.704576141212557E-4 0.0 0.0 3.4155222785203168 0.0 7 4.704576141212557E-4 0.0 0.0 4.140183823471758 0.0 8 4.704576141212557E-4 0.0 0.0 4.671016831405241 0.0 9 4.704576141212557E-4 0.0 0.0 5.72452824862744 0.0 10 4.704576141212557E-4 0.0 0.0 7.1020281427744765 0.0 11 4.704576141212557E-4 0.0 0.0 8.511519154681759 0.0 12 4.704576141212557E-4 0.0 0.0 9.16561205751501 0.0 13 4.704576141212557E-4 0.0 0.0 9.476270902039747 0.0 14 4.704576141212557E-4 0.0 0.0 9.751488606300683 0.0 15 4.704576141212557E-4 0.0 0.0 9.99691066166727 0.0 16 4.704576141212557E-4 0.0 0.0 10.426281644155269 0.0 17 4.704576141212557E-4 0.0 0.0 11.020626429995122 0.0 18 4.704576141212557E-4 0.0 0.0 11.764733556330242 0.0 19 4.704576141212557E-4 0.0 0.0 12.0736673896032 0.0 20 4.704576141212557E-4 0.0 0.0 12.422276481667051 0.0 21 4.704576141212557E-4 0.0 0.0 12.765867359180275 0.0 22 4.704576141212557E-4 0.0 0.0 13.165285873569221 0.0 23 4.704576141212557E-4 0.0 0.0 13.561097546249904 0.0 24 4.704576141212557E-4 0.0 0.0 13.825651544590757 0.0 25 4.704576141212557E-4 0.0 0.0 14.045825707999505 0.0 26 4.704576141212557E-4 0.0 0.0 14.281995430288374 0.0 27 4.704576141212557E-4 0.0 0.0 14.519890163829023 0.0 28 4.704576141212557E-4 0.0 0.0 14.76327356953442 0.0 29 4.704576141212557E-4 0.0 0.0 15.030023036741172 0.0 30 4.704576141212557E-4 0.0 0.0 15.362009293106071 0.0 31 4.704576141212557E-4 0.0 0.0 15.641931573508218 0.0 32 4.704576141212557E-4 0.0 0.0 15.887824086488928 0.0 33 4.704576141212557E-4 0.0 0.0 16.153789457672143 0.0 34 4.704576141212557E-4 0.0 0.0 16.409404761344693 0.0 35 4.704576141212557E-4 0.0 0.0 16.695913448344537 0.0 36 4.704576141212557E-4 0.0 0.0 16.960624265890097 0.0 37 4.704576141212557E-4 0.0 0.0 17.24305565356756 0.0 38 4.704576141212557E-4 0.0 0.0 17.527839329315626 0.0 39 4.704576141212557E-4 0.0 0.0 17.793647881294135 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCTATT 35 1.2107921E-7 45.000004 39 TTAGCGT 35 1.2107921E-7 45.000004 34 TTTCGTC 55 1.8189894E-12 45.000004 16 TAGCGTA 35 1.2107921E-7 45.000004 35 CGTTCAC 35 1.2107921E-7 45.000004 21 CGTTACG 35 1.2107921E-7 45.000004 1 TCTACGA 55 1.8189894E-12 45.000004 22 GCTTACG 35 1.2107921E-7 45.000004 1 ACGTGAC 35 1.2107921E-7 45.000004 21 CCGACCC 35 1.2107921E-7 45.000004 21 CGTCGCA 35 1.2107921E-7 45.000004 12 AACTCGC 35 1.2107921E-7 45.000004 1 CGGTCGG 35 1.2107921E-7 45.000004 13 CAATCCG 35 1.2107921E-7 45.000004 1 ATTTCGC 55 1.8189894E-12 45.000004 17 TCGCCCA 20 7.030922E-4 45.0 18 CTATGCG 40 6.8066583E-9 45.0 15 CTGTCGT 20 7.030922E-4 45.0 24 CTGTCCG 20 7.030922E-4 45.0 1 GTCGCAC 20 7.030922E-4 45.0 35 >>END_MODULE