SRR3548365_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548365_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	707892
Sequences flagged as poor quality	0
Sequence length	46
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	28277	3.9945358896554843	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7158	1.0111711956061094	No Hit
CTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTT	5452	0.7701739813417866	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5413	0.7646646663615354	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3176	0.44865600967379204	No Hit
AAACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGT	1197	0.16909359054771067	No Hit
AATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGT	1084	0.15313070355364944	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGGAACAATCGTAT	949	0.1340599978527798	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGGAACAATCGT	871	0.12304136789227735	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	838	0.11837963983206477	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCC	811	0.11456549869189084	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTTCG	60	0.0	40.000004	16
TCGTTCG	30	4.86486E-6	40.000004	35
ACGTTCA	30	4.86486E-6	40.000004	19
ACTTGCG	30	4.86486E-6	40.000004	1
GGGTCGC	55	5.456968E-12	40.000004	7
CTATACG	55	5.456968E-12	40.000004	1
ATTGTCG	30	4.86486E-6	40.000004	10
CGCGAAG	30	4.86486E-6	40.000004	1
CGTTCGT	30	4.86486E-6	40.000004	36
CATTACT	60	0.0	40.000004	40
CTGCGCG	30	4.86486E-6	40.000004	1
TCGTGTG	30	4.86486E-6	40.000004	21
CGCTAAG	30	4.86486E-6	40.000004	1
CTTTGCG	60	0.0	40.000004	1
GCGATAG	30	4.86486E-6	40.000004	1
ACGTCAC	30	4.86486E-6	40.000004	20
TTACGAG	30	4.86486E-6	40.000004	1
GAACCGA	30	4.86486E-6	40.000004	9
TCGAGCG	30	4.86486E-6	40.000004	1
CGGTAAC	30	4.86486E-6	40.000004	13