##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548365_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 707892 Sequences flagged as poor quality 0 Sequence length 46 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.843500138439197 31.0 30.0 33.0 28.0 34.0 2 31.163106801602503 31.0 31.0 34.0 28.0 34.0 3 31.345520220598623 31.0 31.0 34.0 28.0 34.0 4 35.367096958293075 37.0 35.0 37.0 33.0 37.0 5 34.902329733914215 35.0 35.0 37.0 32.0 37.0 6 35.01508563453182 35.0 35.0 37.0 32.0 37.0 7 34.913950150587944 36.0 35.0 37.0 32.0 37.0 8 35.343979025049016 37.0 35.0 37.0 33.0 37.0 9 36.63885875246506 39.0 35.0 39.0 32.0 39.0 10 35.87161035864228 37.0 35.0 39.0 31.0 39.0 11 36.1440163188735 37.0 35.0 39.0 31.0 39.0 12 35.86559249151001 37.0 35.0 39.0 31.0 39.0 13 35.380038197917195 37.0 35.0 39.0 30.0 39.0 14 36.50897735812808 38.0 35.0 40.0 31.0 41.0 15 36.536773971170746 38.0 35.0 40.0 31.0 41.0 16 36.481035242664134 38.0 35.0 40.0 31.0 41.0 17 36.47265967124929 38.0 35.0 40.0 31.0 41.0 18 36.22673797697954 37.0 35.0 40.0 31.0 41.0 19 36.31171139100315 38.0 35.0 40.0 31.0 41.0 20 36.063714521424174 37.0 34.0 40.0 30.0 41.0 21 36.132342221694834 38.0 34.0 40.0 30.0 41.0 22 36.234462319110825 38.0 34.0 40.0 31.0 41.0 23 36.03026450362485 38.0 34.0 40.0 31.0 41.0 24 35.59067343606087 37.0 34.0 40.0 29.0 41.0 25 35.77733467817124 37.0 34.0 40.0 30.0 41.0 26 35.78014584145604 37.0 34.0 40.0 30.0 41.0 27 35.65906098670418 37.0 34.0 40.0 30.0 41.0 28 35.61229396574619 37.0 34.0 40.0 29.0 41.0 29 35.280387403728255 37.0 34.0 40.0 27.0 41.0 30 35.31123956761766 37.0 34.0 40.0 28.0 41.0 31 35.09001655619784 37.0 34.0 40.0 27.0 41.0 32 35.01525938985043 37.0 34.0 40.0 27.0 41.0 33 34.97902646166364 37.0 34.0 40.0 27.0 41.0 34 34.918905708780436 37.0 34.0 40.0 26.0 41.0 35 34.69921824233075 37.0 33.0 40.0 25.0 41.0 36 34.633870703440635 37.0 33.0 40.0 25.0 41.0 37 34.41647030903019 36.0 33.0 40.0 24.0 41.0 38 34.172469811779195 36.0 33.0 40.0 23.0 41.0 39 34.119362840659306 36.0 33.0 40.0 23.0 41.0 40 33.97161148875817 36.0 33.0 40.0 23.0 41.0 41 34.043618235550056 36.0 33.0 40.0 23.0 41.0 42 33.94156170715307 36.0 33.0 40.0 23.0 41.0 43 33.91315624417284 36.0 33.0 40.0 23.0 41.0 44 33.821023545964636 36.0 33.0 40.0 22.0 41.0 45 33.596983720680555 35.0 33.0 40.0 22.0 41.0 46 32.668402807207876 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 2.0 10 6.0 11 8.0 12 13.0 13 15.0 14 27.0 15 52.0 16 109.0 17 229.0 18 447.0 19 886.0 20 1629.0 21 2760.0 22 3989.0 23 5378.0 24 7086.0 25 8546.0 26 9987.0 27 11322.0 28 12512.0 29 15526.0 30 19516.0 31 25358.0 32 33698.0 33 46892.0 34 76906.0 35 88000.0 36 71248.0 37 89605.0 38 110459.0 39 65678.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.270171156052054 36.11497234041351 19.090765257977203 25.524091245557234 2 19.718827165725845 36.652483712204685 19.542105292897787 24.08658382917168 3 18.68321721392529 38.55093714860459 19.323569132014487 23.442276505455634 4 17.32128629790985 39.20767574714787 18.19062794889616 25.28041000604612 5 16.69760358924808 41.37481423720003 17.355189774711395 24.5723923988405 6 18.135817328066995 42.861905488407835 18.433461601487235 20.56881558203794 7 75.97246472625768 15.169686901391739 4.583326270109 4.274522102241585 8 78.2222429410136 14.074180807241781 3.7754346708254936 3.9281415809191236 9 71.77337785989954 18.39786295084561 6.703988744045702 3.1247704452091565 10 35.40780232012793 43.864742079300235 9.744141761737666 10.983313838834173 11 28.00723839229713 32.43842281025919 26.199618020828037 13.354720776615641 12 30.029298254536002 30.68504800167257 24.877664954541086 14.407988789250336 13 20.812355557062375 41.088753651686986 22.27585563899578 15.823035152254864 14 14.506732665434841 44.302661987986866 25.523667452097214 15.666937894481078 15 12.720301966966712 37.18505082696231 33.228656348708554 16.865990857362423 16 13.970351409537049 35.08091629796636 32.21338848298893 18.735343809507665 17 14.0898611652625 33.83566984794291 25.314737276307685 26.75973171048691 18 18.39291869381205 35.48563905228481 25.53694631384448 20.584495940058652 19 18.445045289394425 39.26757188949727 24.17911206794257 18.108270753165737 20 20.80303210094195 36.279262938414334 23.298186729049064 19.61951823159465 21 17.319308595096427 38.32957569798783 24.516451662117948 19.834664044797794 22 17.563413628067558 36.069767704678114 23.66603945234584 22.70077921490849 23 17.205025625377882 37.912562933328815 20.952207398868754 23.93020404242455 24 15.194266922072858 37.362479022223724 27.200476908907007 20.242777146796403 25 14.755358161979512 37.72778898476039 25.610827640374524 21.90602521288558 26 17.953162346798663 41.285111288162604 21.339978414786437 19.4217479502523 27 15.249642600848718 40.02771609228527 23.37757737055935 21.34506393630667 28 15.82656676442169 38.511100563362774 27.46096862233222 18.201364049883313 29 17.082408050945624 36.94843281178485 26.227447124702643 19.74171201256689 30 18.838608149265706 37.7135212716064 23.163279144276245 20.284591434851645 31 20.8537460516576 41.16998073152402 18.552123770292646 19.42414944652574 32 21.95998824679471 39.20951218547462 20.042887898153953 18.787611669576716 33 20.346465280014467 38.283664739819066 20.304933520932572 21.064936459233895 34 18.0438541472428 39.60364010329259 20.504116447141655 21.848389302322953 35 18.79410983596368 37.39228582891175 22.025534968611034 21.788069366513536 36 23.68835924124019 35.31654546173711 22.81068298554017 18.184412311482543 37 18.70511320935962 39.73953653947213 22.203952015279167 19.351398235889093 38 18.7551208376419 38.34483226254852 22.352986048719295 20.54706085109028 39 19.203353053855672 36.81352522701203 23.717459725494848 20.265661993637448 40 20.109564735863664 35.682844275680466 21.453131268611596 22.75445971984427 41 17.330609754030277 33.04148090386669 25.73245636340007 23.895452978702966 42 21.19786634119329 33.583936532691425 23.07399998869884 22.14419713741644 43 20.064642629101613 33.31242618930571 25.00409667011352 21.61883451147915 44 19.214230419329503 35.202262492018555 22.642013188452477 22.941493900199468 45 19.035107050228 38.52861735971024 22.556265645041897 19.88000994501986 46 19.339955812468567 36.322913664796324 25.473801088301606 18.863329434433503 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 32575.0 1 25629.0 2 18683.0 3 12232.0 4 5781.0 5 5232.5 6 4684.0 7 4684.0 8 4647.0 9 4610.0 10 4936.0 11 5262.0 12 5419.0 13 5576.0 14 5635.0 15 5694.0 16 5634.0 17 5574.0 18 5493.5 19 5413.0 20 5413.0 21 5436.0 22 5459.0 23 5605.5 24 5752.0 25 5613.0 26 5474.0 27 6455.5 28 7437.0 29 8335.5 30 9234.0 31 9234.0 32 10855.0 33 12476.0 34 14222.0 35 15968.0 36 19414.0 37 22860.0 38 25440.5 39 28021.0 40 32406.5 41 36792.0 42 43794.0 43 50796.0 44 50796.0 45 58300.0 46 65804.0 47 73987.5 48 82171.0 49 77364.0 50 72557.0 51 63996.5 52 55436.0 53 45412.0 54 35388.0 55 30280.0 56 25172.0 57 25172.0 58 22949.0 59 20726.0 60 18977.5 61 17229.0 62 15887.0 63 14545.0 64 11866.0 65 9187.0 66 7695.0 67 6203.0 68 5029.0 69 3855.0 70 3855.0 71 3230.0 72 2605.0 73 2148.5 74 1692.0 75 1196.0 76 700.0 77 468.0 78 236.0 79 179.0 80 122.0 81 122.0 82 82.5 83 43.0 84 38.5 85 34.0 86 35.5 87 37.0 88 25.0 89 13.0 90 12.5 91 12.0 92 6.0 93 0.0 94 0.0 95 2.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 707892.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.39174782149045 #Duplication Level Percentage of deduplicated Percentage of total 1 76.12407949451372 20.09047509162298 2 9.984129070622117 5.269972332981414 3 3.789804547518542 3.0005869773254124 4 1.928578747177545 2.03594255797583 5 1.2177757449383737 1.6069615181770616 6 0.8798130629400517 1.393188269230017 7 0.6445173886896276 1.1906958272203536 8 0.5160294365240207 1.0895135005766212 9 0.41172459397302713 0.9779518490437511 >10 3.204448210018307 18.090536200846547 >50 0.7418812228971033 13.96910817676388 >100 0.5464509733240606 22.682856952689882 >500 0.006998879461293387 1.2482313336134239 >1k 0.001615126029529243 0.7753669194682361 >5k 0.001615126029529243 2.5608279255224518 >10k+ 5.383753431764144E-4 4.01778456694215 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 28277 3.9945358896554843 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7158 1.0111711956061094 No Hit CTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTT 5452 0.7701739813417866 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5413 0.7646646663615354 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3176 0.44865600967379204 No Hit AAACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGT 1197 0.16909359054771067 No Hit AATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGT 1084 0.15313070355364944 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCGGAACAATCGTAT 949 0.1340599978527798 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCGGAACAATCGT 871 0.12304136789227735 No Hit AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 838 0.11837963983206477 No Hit AAAAACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCC 811 0.11456549869189084 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8902487950139287 0.0 2 0.0 0.0 0.0 1.1426884326987732 0.0 3 0.0 0.0 0.0 1.4834183745543106 0.0 4 0.0 0.0 0.0 2.9647177818085244 0.0 5 0.0 0.0 0.0 3.1965328044390953 0.0 6 0.0 0.0 0.0 4.3563142400253145 0.0 7 0.0 0.0 0.0 5.2219830143581225 0.0 8 0.0 0.0 0.0 5.839732614579625 0.0 9 0.0 0.0 0.0 6.965751837850972 0.0 10 0.0 0.0 0.0 8.620524034739763 0.0 11 0.0 0.0 0.0 10.277556463415323 0.0 12 0.0 0.0 0.0 11.069908969164787 0.0 13 0.0 0.0 0.0 11.414311787673826 0.0 14 0.0 0.0 0.0 11.709554564820623 0.0 15 0.0 0.0 0.0 11.98530284280653 0.0 16 0.0 0.0 0.0 12.488063150876123 0.0 17 0.0 0.0 0.0 13.190288914128145 0.0 18 0.0 0.0 0.0 14.032366519186542 0.0 19 0.0 0.0 0.0 14.40855384719703 0.0 20 0.0 0.0 0.0 14.800421533228233 0.0 21 0.0 0.0 0.0 15.2061331389534 0.0 22 0.0 0.0 0.0 15.66877433280783 0.0 23 0.0 0.0 0.0 16.113757465828122 0.0 24 0.0 0.0 0.0 16.41874749255536 0.0 25 0.0 0.0 0.0 16.675707593813744 0.0 26 0.0 0.0 0.0 16.942838738112595 0.0 27 0.0 0.0 0.0 17.232007142332446 0.0 28 0.0 0.0 0.0 17.510863239025163 0.0 29 1.4126448667310833E-4 0.0 0.0 17.81571200126573 0.0 30 1.4126448667310833E-4 0.0 0.0 18.206308306916874 0.0 31 1.4126448667310833E-4 0.0 0.0 18.52104558322456 0.0 32 1.4126448667310833E-4 0.0 0.0 18.795663745317082 0.0 33 2.8252897334621666E-4 0.0 0.0 19.083419504670204 0.0 34 2.8252897334621666E-4 0.0 0.0 19.37188158645669 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTTCG 60 0.0 40.000004 16 TCGTTCG 30 4.86486E-6 40.000004 35 ACGTTCA 30 4.86486E-6 40.000004 19 ACTTGCG 30 4.86486E-6 40.000004 1 GGGTCGC 55 5.456968E-12 40.000004 7 CTATACG 55 5.456968E-12 40.000004 1 ATTGTCG 30 4.86486E-6 40.000004 10 CGCGAAG 30 4.86486E-6 40.000004 1 CGTTCGT 30 4.86486E-6 40.000004 36 CATTACT 60 0.0 40.000004 40 CTGCGCG 30 4.86486E-6 40.000004 1 TCGTGTG 30 4.86486E-6 40.000004 21 CGCTAAG 30 4.86486E-6 40.000004 1 CTTTGCG 60 0.0 40.000004 1 GCGATAG 30 4.86486E-6 40.000004 1 ACGTCAC 30 4.86486E-6 40.000004 20 TTACGAG 30 4.86486E-6 40.000004 1 GAACCGA 30 4.86486E-6 40.000004 9 TCGAGCG 30 4.86486E-6 40.000004 1 CGGTAAC 30 4.86486E-6 40.000004 13 >>END_MODULE