SRR3548364_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548364_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1006407
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGT	17164	1.7054730342694355	No Hit
AATCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCT	14497	1.4404709029249598	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCC	14174	1.4083765315622805	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	9729	0.9667063126548205	No Hit
CTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGCT	3860	0.38354264229084256	No Hit
AATGACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTT	3618	0.35949670461354105	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCT	2928	0.29093597321958214	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2300	0.22853577131319636	No Hit
AACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTG	2033	0.2020057491650992	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1957	0.19445413237388054	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTAT	1422	0.14129472469885443	No Hit
AATGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTC	1304	0.12956984599669916	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1252	0.12440295029744428	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATT	20	7.032866E-4	45.000004	41
TCGATAT	20	7.032866E-4	45.000004	29
CGTTCCC	20	7.032866E-4	45.000004	29
TACGCTA	20	7.032866E-4	45.000004	35
TAACCGC	20	7.032866E-4	45.000004	27
CGTAGGT	20	7.032866E-4	45.000004	24
TATTACG	20	7.032866E-4	45.000004	1
CATACCG	40	6.8139343E-9	45.000004	1
TCGTAGA	20	7.032866E-4	45.000004	24
TACTCGA	20	7.032866E-4	45.000004	39
CGTGTAA	20	7.032866E-4	45.000004	41
ATGCGAT	20	7.032866E-4	45.000004	32
ACGTAAT	20	7.032866E-4	45.000004	23
CGGTCAT	20	7.032866E-4	45.000004	31
CGCGTTA	20	7.032866E-4	45.000004	39
ATCGGCC	20	7.032866E-4	45.000004	13
CGGTACG	40	6.8139343E-9	45.000004	1
CGGTAAC	20	7.032866E-4	45.000004	10
CGATCAT	20	7.032866E-4	45.000004	11
TATCGTC	20	7.032866E-4	45.000004	35