SRR3548362_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548362_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	752774
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	9626	1.2787370445844304	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGT	2176	0.2890641812815002	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2158	0.2866730253701642	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCC	2128	0.2826877655179377	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2062	0.27392019384303923	No Hit
AATCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCT	1945	0.2583776804193556	No Hit
CTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGCT	1620	0.21520403202023453	Illumina Single End Adapter 1 (95% over 22bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1148	0.1525026103452032	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	993	0.1319121011086993	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCCGT	20	7.031733E-4	45.000004	44
CGAACGC	20	7.031733E-4	45.000004	14
ATTAGTC	20	7.031733E-4	45.000004	24
CGTATCG	20	7.031733E-4	45.000004	18
ATCTACG	20	7.031733E-4	45.000004	1
GACGTCG	20	7.031733E-4	45.000004	13
CTATACG	40	6.8102963E-9	45.000004	1
CGTTGAC	20	7.031733E-4	45.000004	13
ACCGACA	20	7.031733E-4	45.000004	28
CCGCTAT	20	7.031733E-4	45.000004	20
AACGGTC	20	7.031733E-4	45.000004	29
CTAACGC	20	7.031733E-4	45.000004	12
TACGCCG	20	7.031733E-4	45.000004	40
AATTGCG	40	6.8102963E-9	45.000004	1
CGCTATA	20	7.031733E-4	45.000004	21
TCTAACG	40	6.8102963E-9	45.000004	1
TCGCTAT	20	7.031733E-4	45.000004	34
GAACGTA	20	7.031733E-4	45.000004	9
CCGGTAA	20	7.031733E-4	45.000004	25
GATCTCG	20	7.031733E-4	45.000004	12