SRR3548361_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548361_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	788995
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12044	1.5264989005000031	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3109	0.39404558964251996	No Hit
CTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTT	2483	0.3147041489489794	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2419	0.3065925639579465	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTAT	1882	0.2385312961425611	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGT	1601	0.2029163682913073	No Hit
AATCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGT	1595	0.20215590719839796	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1463	0.1854257631543926	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTT	1043	0.13219348665073924	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTC	20	0.0012555295	40.0	39
GTTTGCG	20	0.0012555295	40.0	31
AGACTTA	25	7.79243E-5	40.0	10
CTCGTCA	30	4.865571E-6	40.0	37
ATCTACG	40	1.9270374E-8	40.0	1
GTCGAAT	20	0.0012555295	40.0	28
GATCGAT	30	4.865571E-6	40.0	39
ATAGGCC	20	0.0012555295	40.0	26
CCTAGTA	20	0.0012555295	40.0	24
ACGTTGA	20	0.0012555295	40.0	17
TCCGATC	30	4.865571E-6	40.0	14
CGTGCAA	20	0.0012555295	40.0	19
CGTGAAG	25	7.79243E-5	40.0	1
TAGAACG	40	1.9270374E-8	40.0	1
CGGCAAA	25	7.79243E-5	40.0	6
GTTAGTA	20	0.0012555295	40.0	13
GATCATA	35	3.0547562E-7	40.0	9
TAAGTCG	20	0.0012555295	40.0	22
TAACGCG	45	1.2205419E-9	40.0	1
CATTCGG	35	3.0547562E-7	40.0	2