SRR3548359_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548359_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	737588
Sequences flagged as poor quality	0
Sequence length	46
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13924	1.887774746877661	No Hit
CTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTT	3401	0.4610975232785783	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3274	0.44387923881624974	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2745	0.3721589830637158	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCAGGATATCGTAT	2488	0.3373156830100273	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCAGGATATCGT	2436	0.3302656767734833	No Hit
AATCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGT	2037	0.2761704366123093	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1562	0.21177134118234028	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	50	7.8216544E-11	40.000004	1
CGGAACC	25	7.791932E-5	40.000004	34
AGCCGAT	30	4.865138E-6	40.000004	17
TCCGCAA	30	4.865138E-6	40.000004	12
GTCGAGC	25	7.791932E-5	40.000004	30
GGTCGAA	25	7.791932E-5	40.000004	26
CTATCTA	25	7.791932E-5	40.000004	38
TATGGTA	25	7.791932E-5	40.000004	27
ACCGCAA	25	7.791932E-5	40.000004	18
ATCAGTC	25	7.791932E-5	40.000004	36
CGTTGTC	25	7.791932E-5	40.000004	36
TAGCGAG	25	7.791932E-5	40.000004	1
GCGTTGT	25	7.791932E-5	40.000004	35
TAGCCCG	25	7.791932E-5	40.000004	15
ACTAGGT	25	7.791932E-5	40.000004	25
AAGCCGC	30	4.865138E-6	40.000004	13
AATTGCG	25	7.791932E-5	40.000004	1
TGCGAAT	25	7.791932E-5	40.000004	11
CCGAGTG	25	7.791932E-5	40.000004	13
GATATGC	30	4.865138E-6	40.000004	34