##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548359_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 737588 Sequences flagged as poor quality 0 Sequence length 46 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.008630834558048 31.0 31.0 34.0 28.0 34.0 2 31.334711248013797 31.0 31.0 34.0 28.0 34.0 3 31.437101742436155 31.0 31.0 34.0 28.0 34.0 4 35.43099806395983 37.0 35.0 37.0 33.0 37.0 5 34.9967393721156 37.0 35.0 37.0 32.0 37.0 6 35.17311154736791 37.0 35.0 37.0 32.0 37.0 7 35.129524883810475 37.0 35.0 37.0 32.0 37.0 8 35.50997304728385 37.0 35.0 37.0 33.0 37.0 9 36.85072831987505 39.0 37.0 39.0 32.0 39.0 10 36.127980661290586 37.0 35.0 39.0 31.0 39.0 11 36.30872112886869 38.0 35.0 39.0 32.0 39.0 12 35.97872389464037 37.0 35.0 39.0 31.0 39.0 13 35.6132054751433 37.0 35.0 39.0 30.0 39.0 14 36.78650683037143 39.0 35.0 40.0 31.0 41.0 15 36.76436032039567 38.0 35.0 40.0 31.0 41.0 16 36.668386687418995 38.0 35.0 40.0 31.0 41.0 17 36.6389203728911 38.0 35.0 40.0 31.0 41.0 18 36.491077674799484 38.0 35.0 40.0 31.0 41.0 19 36.69133039040765 38.0 35.0 40.0 31.0 41.0 20 36.496121140799474 38.0 35.0 40.0 31.0 41.0 21 36.56019078401492 38.0 35.0 40.0 31.0 41.0 22 36.61948811531641 38.0 35.0 40.0 31.0 41.0 23 36.4570993562802 38.0 35.0 40.0 31.0 41.0 24 36.05595400142085 38.0 34.0 40.0 30.0 41.0 25 36.222799177860814 38.0 35.0 40.0 30.0 41.0 26 36.219076232259745 38.0 35.0 40.0 30.0 41.0 27 36.06221901657836 38.0 35.0 40.0 30.0 41.0 28 36.042550854948836 38.0 35.0 40.0 30.0 41.0 29 35.78370580866283 38.0 34.0 40.0 30.0 41.0 30 35.77592504216446 38.0 34.0 40.0 30.0 41.0 31 35.72900725066026 38.0 34.0 40.0 30.0 41.0 32 35.683579450858744 38.0 34.0 40.0 30.0 41.0 33 35.6421810007755 38.0 34.0 40.0 29.0 41.0 34 35.596964701161085 38.0 34.0 40.0 29.0 41.0 35 35.37782610346155 37.0 34.0 40.0 28.0 41.0 36 35.323035353069734 37.0 34.0 40.0 28.0 41.0 37 35.23046199233176 37.0 34.0 40.0 28.0 41.0 38 35.013728531375236 37.0 34.0 40.0 27.0 41.0 39 34.97615335390489 37.0 34.0 40.0 27.0 41.0 40 34.7777688899494 37.0 33.0 40.0 26.0 41.0 41 34.85775121070299 37.0 34.0 40.0 26.0 41.0 42 34.742558176109156 36.0 34.0 40.0 26.0 41.0 43 34.70611099963666 36.0 33.0 40.0 26.0 41.0 44 34.59079323416324 36.0 33.0 40.0 26.0 41.0 45 34.36774323877287 36.0 33.0 40.0 25.0 41.0 46 33.21008205122643 35.0 32.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 7.0 10 10.0 11 18.0 12 13.0 13 23.0 14 31.0 15 55.0 16 104.0 17 198.0 18 369.0 19 709.0 20 1253.0 21 2142.0 22 3134.0 23 4321.0 24 5605.0 25 6770.0 26 8191.0 27 9379.0 28 11625.0 29 14386.0 30 18548.0 31 24135.0 32 32460.0 33 45606.0 34 74409.0 35 81074.0 36 74958.0 37 98941.0 38 133552.0 39 85559.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.402040163343223 32.882449280628215 20.47213349457963 26.243377061448943 2 24.57022077365684 31.423911451921672 19.712495322592016 24.293372451829477 3 20.024186944473065 32.731552031757566 21.263903425760724 25.980357598008645 4 20.510772951837613 33.81169433342191 18.4798288475409 27.197703867199575 5 17.101688205339567 37.66926793819856 16.865241842329322 28.36380201413255 6 19.532313432431113 38.20981360868127 19.538143245280562 22.719729713607055 7 82.11982841369436 10.095744507773988 3.8727582335938218 3.9116688449378247 8 84.06400321046438 8.326192942401448 3.1281691133803697 4.481634733753803 9 79.61816081606534 10.800609554385375 5.396779774074416 4.184449855474872 10 42.78201380716606 32.660780815306104 10.59304110153636 13.964164275991475 11 33.20918995428342 30.406541321171172 18.59425587184173 17.790012852703676 12 31.244136292889795 26.774025607791884 23.68219114193832 18.29964695738 13 23.24427729301453 35.74637873718119 21.66222877812546 19.347115191678824 14 19.10239862904494 34.93793282970981 25.92544889558941 20.034219645655842 15 17.191033476683458 29.51200399138815 31.44709512627646 21.849867405651935 16 19.590747137968624 29.54779633074291 29.38361253165724 21.47784399963123 17 19.941756102322707 28.462773255530188 23.898165371453985 27.697305270693125 18 23.66456612634696 27.842101552628296 24.67922471623725 23.814107604787495 19 24.23615893967906 30.781682999181115 21.956024230329128 23.026133830810696 20 26.612011041394386 29.79047923773163 21.842410668286362 21.755099052587624 21 23.737506575486584 30.85679268100891 23.502415982906445 21.90328476059806 22 24.074144373281563 29.1200507600449 22.30960915850041 24.496195708173126 23 22.564765153446096 32.42663926202704 20.565139346084806 24.443456238442057 24 21.048742658503123 29.3196201673563 27.84955828999387 21.782078884146706 25 21.841190474899268 30.49168370418174 24.35939847177557 23.307727349143427 26 23.504991946723646 32.73602607417691 20.20762268366622 23.551359295433222 27 20.086281230171856 32.08417165138261 22.978681865757036 24.850865252688493 28 20.781791460815523 32.99497822632689 25.594776487686893 20.62845382517069 29 20.27514005108543 30.44274039165496 25.206483836504933 24.075635720754676 30 23.784822963497238 31.032364951707457 23.757843131938156 21.424968952857153 31 27.500447404241935 30.994945687836573 20.35404589011752 21.150561017803977 32 26.589776406340665 30.02773906299994 21.910605920920624 21.47187860973877 33 24.99105191516131 30.438673080364648 21.21862069339523 23.351654311078814 34 23.123884878821237 29.74872150848441 24.312353237850942 22.81504037484341 35 23.32142063048748 31.11899868219114 24.06478955731384 21.49479113000754 36 24.182741584732938 31.75526174503924 23.328877367853057 20.733119302374767 37 23.57061123554071 31.879585893479828 22.754844167746764 21.7949587032327 38 24.53036112301176 30.614380928106204 24.179758889786708 20.67549905909532 39 24.25635991908762 29.063786287195565 23.8271230009165 22.852730792800315 40 25.013286550215025 29.624126205957797 22.534938203983796 22.827649039843383 41 20.01103597130105 27.80563132805848 26.322960785696083 25.860371914944384 42 25.481027348601117 29.04019588171174 22.25388699382311 23.224889775864032 43 24.1173934500019 27.709642781607073 24.275069551023066 23.897894217367963 44 23.17174357500393 29.781395575849935 23.092973313014852 23.953887536131283 45 23.931246169948537 30.95657738466461 21.887422246565833 23.22475419882102 46 23.393547617369045 29.670086823538345 25.49092447274088 21.445441086351728 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 16166.0 1 12671.0 2 9176.0 3 6078.0 4 2980.0 5 2601.5 6 2223.0 7 2223.0 8 2265.5 9 2308.0 10 2340.5 11 2373.0 12 2412.0 13 2451.0 14 2400.0 15 2349.0 16 2418.5 17 2488.0 18 2553.0 19 2618.0 20 2618.0 21 2453.5 22 2289.0 23 2649.5 24 3010.0 25 3556.0 26 4102.0 27 5078.5 28 6055.0 29 6763.5 30 7472.0 31 7472.0 32 8994.5 33 10517.0 34 12300.5 35 14084.0 36 16300.5 37 18517.0 38 21799.5 39 25082.0 40 29966.0 41 34850.0 42 38105.0 43 41360.0 44 41360.0 45 49027.5 46 56695.0 47 61283.0 48 65871.0 49 63023.5 50 60176.0 51 56879.5 52 53583.0 53 48865.0 54 44147.0 55 43792.5 56 43438.0 57 43438.0 58 40945.0 59 38452.0 60 37332.5 61 36213.0 62 36150.0 63 36087.0 64 32490.0 65 28893.0 66 24940.0 67 20987.0 68 17758.0 69 14529.0 70 14529.0 71 12965.5 72 11402.0 73 8763.5 74 6125.0 75 4918.0 76 3711.0 77 2754.0 78 1797.0 79 1790.5 80 1784.0 81 1784.0 82 1297.5 83 811.0 84 489.5 85 168.0 86 178.5 87 189.0 88 109.0 89 29.0 90 19.5 91 10.0 92 13.5 93 17.0 94 17.0 95 10.0 96 3.0 97 1.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 737588.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.380815528035676 #Duplication Level Percentage of deduplicated Percentage of total 1 77.41194596344891 15.777185903473182 2 9.354324456843125 3.8129752228862444 3 3.2946196599668425 2.014411065744715 4 1.6661126327606417 1.3582693686889793 5 0.9939235652595403 1.0128486416261109 6 0.6816569787614565 0.8335635082521227 7 0.47203426802964377 0.6734310337736461 8 0.34628768513406216 0.5646100344278258 9 0.2698162974808856 0.4949168566873973 >10 3.0675702331355525 14.799694489579613 >50 1.3125520548932823 19.48790107599035 >100 1.1197856133791235 34.36594732368307 >500 0.004015967531544974 0.4571249527897889 >1k 0.004685295453469135 2.447685176934402 >5k 0.0 0.0 >10k+ 6.693279219241623E-4 1.8994353454625543 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 13924 1.887774746877661 No Hit CTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTT 3401 0.4610975232785783 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3274 0.44387923881624974 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2745 0.3721589830637158 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGCAGGATATCGTAT 2488 0.3373156830100273 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGCAGGATATCGT 2436 0.3302656767734833 No Hit AATCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGT 2037 0.2761704366123093 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1562 0.21177134118234028 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.355770430104611E-4 0.0 0.0 0.5288860447838089 0.0 2 1.355770430104611E-4 0.0 0.0 0.640059220052387 0.0 3 1.355770430104611E-4 0.0 0.0 0.8168516841380282 0.0 4 1.355770430104611E-4 0.0 0.0 1.6398043352115272 0.0 5 1.355770430104611E-4 0.0 0.0 1.7866342727918567 0.0 6 1.355770430104611E-4 0.0 0.0 2.421270411123825 0.0 7 1.355770430104611E-4 0.0 0.0 2.9229054702625312 0.0 8 1.355770430104611E-4 0.0 0.0 3.30170772843376 0.0 9 1.355770430104611E-4 0.0 0.0 4.122762300905112 0.0 10 1.355770430104611E-4 0.0 0.0 4.920904353107697 0.0 11 1.355770430104611E-4 0.0 0.0 6.007283198750522 0.0 12 1.355770430104611E-4 0.0 0.0 6.38893257482497 0.0 13 1.355770430104611E-4 0.0 0.0 6.582265438157887 0.0 14 1.355770430104611E-4 0.0 0.0 6.784681963372506 0.0 15 1.355770430104611E-4 0.0 0.0 6.9218859308990925 0.0 16 1.355770430104611E-4 0.0 0.0 7.197785213425381 0.0 17 1.355770430104611E-4 0.0 0.0 7.502426829069887 0.0 18 1.355770430104611E-4 0.0 0.0 7.993758032939798 0.0 19 1.355770430104611E-4 0.0 0.0 8.15889087132654 0.0 20 1.355770430104611E-4 0.0 0.0 8.37039105842286 0.0 21 1.355770430104611E-4 0.0 0.0 8.587449904282607 0.0 22 1.355770430104611E-4 0.0 0.0 8.792442393314424 0.0 23 1.355770430104611E-4 0.0 0.0 9.029837795625742 0.0 24 1.355770430104611E-4 0.0 0.0 9.183175431270573 0.0 25 1.355770430104611E-4 0.0 0.0 9.32892075250682 0.0 26 1.355770430104611E-4 0.0 0.0 9.468971837936627 0.0 27 1.355770430104611E-4 0.0 0.0 9.621631588366405 0.0 28 1.355770430104611E-4 0.0 0.0 9.774562492882206 0.0 29 1.355770430104611E-4 0.0 0.0 9.928578013742088 0.0 30 1.355770430104611E-4 0.0 0.0 10.17288784524694 0.0 31 2.711540860209222E-4 0.0 0.0 10.321615861429416 0.0 32 2.711540860209222E-4 0.0 0.0 10.480918886966707 0.0 33 2.711540860209222E-4 0.0 0.0 10.638188256858843 0.0 34 2.711540860209222E-4 0.0 0.0 10.787865312342392 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGTACG 50 7.8216544E-11 40.000004 1 CGGAACC 25 7.791932E-5 40.000004 34 AGCCGAT 30 4.865138E-6 40.000004 17 TCCGCAA 30 4.865138E-6 40.000004 12 GTCGAGC 25 7.791932E-5 40.000004 30 GGTCGAA 25 7.791932E-5 40.000004 26 CTATCTA 25 7.791932E-5 40.000004 38 TATGGTA 25 7.791932E-5 40.000004 27 ACCGCAA 25 7.791932E-5 40.000004 18 ATCAGTC 25 7.791932E-5 40.000004 36 CGTTGTC 25 7.791932E-5 40.000004 36 TAGCGAG 25 7.791932E-5 40.000004 1 GCGTTGT 25 7.791932E-5 40.000004 35 TAGCCCG 25 7.791932E-5 40.000004 15 ACTAGGT 25 7.791932E-5 40.000004 25 AAGCCGC 30 4.865138E-6 40.000004 13 AATTGCG 25 7.791932E-5 40.000004 1 TGCGAAT 25 7.791932E-5 40.000004 11 CCGAGTG 25 7.791932E-5 40.000004 13 GATATGC 30 4.865138E-6 40.000004 34 >>END_MODULE