SRR3548358_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548358_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	711791
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	17028	2.3922752605750843	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3883	0.5455253016686078	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3359	0.4719081865322826	No Hit
CTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGCT	2000	0.28098135548215697	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1911	0.268477685163201	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCC	931	0.1307968209769441	No Hit
AATCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCT	924	0.1298133862327565	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGT	884	0.1241937591231134	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCG	40	6.8084773E-9	45.000004	1
AGACTCG	20	7.031473E-4	45.000004	1
AAATCGA	20	7.031473E-4	45.000004	17
CGAGTTA	40	6.8084773E-9	45.000004	19
TTGGACG	20	7.031473E-4	45.000004	17
CGAGTCG	20	7.031473E-4	45.000004	28
CCGATAC	20	7.031473E-4	45.000004	14
CTATCCG	20	7.031473E-4	45.000004	1
TAGCGCG	20	7.031473E-4	45.000004	1
CGACCCA	20	7.031473E-4	45.000004	39
CCCACGT	20	7.031473E-4	45.000004	34
GCCGATA	20	7.031473E-4	45.000004	13
CCCCGTA	20	7.031473E-4	45.000004	24
TACGCCC	20	7.031473E-4	45.000004	15
GTTCGGC	20	7.031473E-4	45.000004	36
GTTCGAT	20	7.031473E-4	45.000004	18
CTACGTC	20	7.031473E-4	45.000004	2
TACGACG	20	7.031473E-4	45.000004	1
TGTTCGG	20	7.031473E-4	45.000004	2
AGCGCGT	20	7.031473E-4	45.000004	21