##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548358_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 711791 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.095282182550775 31.0 31.0 33.0 28.0 34.0 2 31.23987237826834 31.0 31.0 34.0 28.0 34.0 3 31.468249809283904 31.0 31.0 34.0 30.0 34.0 4 35.41933797982835 37.0 35.0 37.0 33.0 37.0 5 35.016361544329726 35.0 35.0 37.0 32.0 37.0 6 34.98396720385619 36.0 35.0 37.0 32.0 37.0 7 34.17120615461561 36.0 35.0 37.0 31.0 37.0 8 34.52032689370897 37.0 35.0 37.0 32.0 37.0 9 35.59829219532138 39.0 35.0 39.0 30.0 39.0 10 35.374260140968346 37.0 35.0 39.0 30.0 39.0 11 35.77255402217786 37.0 35.0 39.0 30.0 39.0 12 35.65685432943097 37.0 35.0 39.0 30.0 39.0 13 35.42424953392218 37.0 35.0 39.0 30.0 39.0 14 36.48038960874751 38.0 35.0 40.0 31.0 41.0 15 36.60300706246637 38.0 35.0 40.0 31.0 41.0 16 36.570144888035955 38.0 35.0 40.0 31.0 41.0 17 36.52062894866611 38.0 35.0 40.0 31.0 41.0 18 36.33827204895819 38.0 35.0 40.0 31.0 41.0 19 36.28020303712747 38.0 34.0 40.0 30.0 41.0 20 36.16130156183486 38.0 34.0 40.0 30.0 41.0 21 36.11425263876615 38.0 34.0 40.0 30.0 41.0 22 36.1292696873099 38.0 34.0 40.0 30.0 41.0 23 35.98484105587174 38.0 34.0 40.0 30.0 41.0 24 35.640350889516725 38.0 34.0 40.0 29.0 41.0 25 35.68845630248205 38.0 34.0 40.0 29.0 41.0 26 35.55783088013195 38.0 34.0 40.0 29.0 41.0 27 35.355802475726726 37.0 34.0 40.0 27.0 41.0 28 35.30941666865695 37.0 34.0 40.0 27.0 41.0 29 35.062043493104014 37.0 34.0 40.0 27.0 41.0 30 35.056557332138226 37.0 34.0 40.0 27.0 41.0 31 34.84544058578993 37.0 33.0 40.0 25.0 41.0 32 34.779273691294215 37.0 33.0 40.0 25.0 41.0 33 34.638445835926554 37.0 33.0 40.0 25.0 41.0 34 34.527577617587184 37.0 33.0 40.0 24.0 41.0 35 34.36994848206847 37.0 33.0 40.0 24.0 41.0 36 34.170871786802586 37.0 33.0 40.0 23.0 41.0 37 33.96520186403031 36.0 33.0 40.0 23.0 41.0 38 33.8785668826945 36.0 33.0 40.0 23.0 41.0 39 33.768476982709814 36.0 33.0 40.0 22.0 41.0 40 33.54635700648083 36.0 32.0 40.0 21.0 41.0 41 33.52832081327244 36.0 33.0 40.0 21.0 41.0 42 33.42124022360496 36.0 32.0 40.0 21.0 41.0 43 33.30350763075116 36.0 32.0 39.0 20.0 41.0 44 33.16280059736636 35.0 32.0 39.0 20.0 41.0 45 33.01788165346289 35.0 32.0 39.0 20.0 40.0 46 32.888496763797235 35.0 31.0 39.0 19.0 40.0 47 32.79713567606221 35.0 31.0 39.0 18.0 40.0 48 32.62578762586209 35.0 31.0 39.0 18.0 40.0 49 32.428965805973945 35.0 31.0 39.0 17.0 40.0 50 32.2541982126776 35.0 31.0 39.0 15.0 40.0 51 30.394257584038012 34.0 27.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 3.0 10 10.0 11 9.0 12 16.0 13 35.0 14 58.0 15 122.0 16 239.0 17 466.0 18 1015.0 19 1941.0 20 3116.0 21 4669.0 22 6115.0 23 7864.0 24 9224.0 25 10376.0 26 11635.0 27 13265.0 28 15689.0 29 18950.0 30 22995.0 31 28539.0 32 36324.0 33 48621.0 34 72137.0 35 74478.0 36 72397.0 37 92149.0 38 105634.0 39 53695.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.5952435476144 34.139796653793034 18.794561886845997 25.470397911746566 2 24.34562954575149 35.24897055455885 19.14663152526514 21.258768374424513 3 21.591028827282166 35.35981769929656 18.214054406419862 24.83509906700141 4 19.893620458814457 36.2340911868793 17.841754110406004 26.030534243900245 5 17.178778602145854 38.460165975686685 17.044750495580864 27.3163049265866 6 19.211116746348296 42.652126818124984 17.95414665259887 20.182609782927855 7 77.30822671261647 15.451164737963813 3.7075489855870614 3.533059563832642 8 79.21791649515096 13.505087869894394 3.736490065201724 3.540505569752919 9 72.19605193097412 17.799747397761422 5.996844579377935 4.007356091886523 10 37.76291074205771 37.525621987353034 11.398289666489179 13.31317760410008 11 30.16152213219892 35.83720502226075 20.43085681049634 13.570416035043994 12 28.863247779193614 33.99368634894231 22.508713934286888 14.634351937577181 13 22.809223493975058 41.04378953934511 20.511076987486497 15.635909979193329 14 18.257466025841858 41.51204496825613 24.10328312664813 16.127205879253882 15 16.903557364451082 36.593606831218715 31.235854344884945 15.266981459445258 16 18.162494327688886 35.38496553061222 29.727405937978986 16.725134203719914 17 18.08129071595454 33.049027031811306 24.66046915456925 24.209213097664907 18 20.649460305061456 34.70204034611283 24.65119676983834 19.997302578987373 19 22.676459803509736 36.87781947228891 22.76103519150987 17.68468553269148 20 25.073090275094795 35.114801957316125 21.37565661830509 18.43645114928399 21 20.81004114971951 36.054965572759414 24.104969014781023 19.030024262740046 22 22.032872008777858 33.46825121419068 23.055222670699685 21.443654106331774 23 19.435339868023057 38.23214960571291 20.66547624232394 21.66703428394009 24 18.244540883489677 35.102438777674905 26.34860513830605 20.30441520052937 25 19.33025284107273 36.52364247370365 24.322729565279698 19.82337511994392 26 20.146644169426136 39.76209308631326 21.719999269448476 18.37126347481213 27 17.283022685029735 39.73554034822019 23.805583380514786 19.175853586235288 28 19.836440752973836 37.849733980901696 24.991043719294005 17.32278154683046 29 20.066985955146947 36.79731831394328 24.982052315918576 18.1536434149912 30 21.132045783102065 36.394110068826386 23.93623971081399 18.537604437257567 31 22.259061999940993 38.63001920507565 20.16785826176504 18.94306053321832 32 24.999754141313954 35.939622726333994 21.65200178142179 17.408621350930257 33 24.428378554940988 36.16890351240743 21.8038722040599 17.59884572859168 34 21.649332458544713 36.32920337571001 23.407011327763346 18.614452837981936 35 21.906430398810887 36.68633067852783 23.487933958142207 17.91930496451908 36 24.235203873047002 35.71933334363598 23.33339421262702 16.712068570689993 37 20.952498696948965 38.22835635741391 22.640634680685764 18.17851026495137 38 22.42933670136318 36.59711909816224 22.303738035462654 18.66980616501192 39 22.613519979881737 34.35095414243788 23.696703105265453 19.338822772414936 40 23.875828719385325 34.90322299663806 22.635015053576122 18.5859332304005 41 20.263532413306713 32.9679639107547 24.83650397377882 21.931999702159764 42 25.842979189115905 33.2805556687286 21.933826080970398 18.942639061185098 43 23.892547110036514 33.36667645418388 23.682794528169083 19.05798190761052 44 21.64385332211281 35.17226264451222 24.1329266596515 19.050957373723467 45 22.259623962651958 37.52182873905402 21.70595020167437 18.512597096619654 46 21.393077462344987 35.14809824794076 24.789861068768783 18.668963220945475 47 22.789554799091306 34.810920621362165 23.252893054281383 19.14663152526514 48 23.06365211136415 32.43086804975056 25.503132239660236 19.002347599225054 49 22.86162651677248 30.793027728645068 25.71358727491637 20.631758479666082 50 19.784318711531895 33.99790106927455 24.872469587280534 21.34531063191302 51 20.79697551668959 33.719870018024956 24.747573374768717 20.73558109051674 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 19690.0 1 15437.5 2 11185.0 3 7443.0 4 3701.0 5 3345.5 6 2990.0 7 3186.5 8 3383.0 9 3729.0 10 4075.0 11 4307.0 12 4539.0 13 4645.5 14 4752.0 15 4626.0 16 4500.0 17 4519.5 18 4539.0 19 4578.5 20 4618.0 21 4353.5 22 4089.0 23 4221.0 24 4353.0 25 5756.5 26 8262.5 27 9365.0 28 10586.5 29 11808.0 30 13043.5 31 14279.0 32 15875.0 33 17471.0 34 18651.0 35 19831.0 36 22208.0 37 24585.0 38 27060.5 39 29536.0 40 33253.0 41 36970.0 42 42582.0 43 48194.0 44 52190.5 45 56187.0 46 55661.5 47 55136.0 48 56169.0 49 57202.0 50 54525.5 51 51849.0 52 48736.0 53 45623.0 54 39898.0 55 34173.0 56 29535.5 57 24898.0 58 21887.5 59 18877.0 60 19233.5 61 19590.0 62 17382.0 63 15174.0 64 13430.0 65 11686.0 66 10296.0 67 8906.0 68 7355.5 69 5805.0 70 4887.5 71 3970.0 72 3401.5 73 2833.0 74 2134.5 75 1100.5 76 765.0 77 838.5 78 912.0 79 696.0 80 480.0 81 362.0 82 244.0 83 227.5 84 211.0 85 157.0 86 103.0 87 74.0 88 45.0 89 35.5 90 26.0 91 28.5 92 31.0 93 20.5 94 10.0 95 7.5 96 5.0 97 3.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 711791.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.034268430370098 #Duplication Level Percentage of deduplicated Percentage of total 1 81.12924823862848 23.555283709144696 2 8.286718620382088 4.811976256622394 3 2.9788892004810688 2.594696060132937 4 1.4756714913905373 1.7138016878430973 5 0.8969286675634551 1.3020833848465772 6 0.5665220820287448 0.9869132520812834 7 0.3841596278923439 0.7807655629436183 8 0.3195621650498963 0.7422602944199138 9 0.23427898304915767 0.6121906993299033 >10 2.329720146021467 15.42442087437132 >50 0.8161692038236794 17.14074012468888 >100 0.5781815714927276 25.90227645327866 >500 0.0014812508236363646 0.3926542206588865 >1k 0.001975001098181819 1.5988581683127274 >5k 0.0 0.0 >10k+ 4.937502745454548E-4 2.441079251325126 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 17028 2.3922752605750843 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3883 0.5455253016686078 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3359 0.4719081865322826 No Hit CTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGCT 2000 0.28098135548215697 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1911 0.268477685163201 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCC 931 0.1307968209769441 No Hit AATCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCT 924 0.1298133862327565 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGT 884 0.1241937591231134 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.404906777410785E-4 0.0 0.0 0.4304634365986645 0.0 2 1.404906777410785E-4 0.0 0.0 0.5310547618612766 0.0 3 1.404906777410785E-4 0.0 0.0 0.6537031235292382 0.0 4 1.404906777410785E-4 0.0 0.0 1.39254359776957 0.0 5 1.404906777410785E-4 0.0 0.0 1.517720791636871 0.0 6 1.404906777410785E-4 0.0 0.0 2.1367227177640626 0.0 7 1.404906777410785E-4 0.0 0.0 2.628018617824614 0.0 8 1.404906777410785E-4 0.0 0.0 3.024904782443161 0.0 9 1.404906777410785E-4 0.0 0.0 3.7543323812748404 0.0 10 1.404906777410785E-4 0.0 0.0 4.725544436498916 0.0 11 1.404906777410785E-4 0.0 0.0 5.705326423065197 0.0 12 1.404906777410785E-4 0.0 0.0 6.153210703703755 0.0 13 1.404906777410785E-4 0.0 0.0 6.389235042308767 0.0 14 1.404906777410785E-4 0.0 0.0 6.629474101246012 0.0 15 1.404906777410785E-4 0.0 0.0 6.777129803551885 0.0 16 1.404906777410785E-4 0.0 0.0 7.151256478376378 0.0 17 1.404906777410785E-4 0.0 0.0 7.531845724376959 0.0 18 1.404906777410785E-4 0.0 0.0 8.137220054763267 0.0 19 1.404906777410785E-4 0.0 0.0 8.33966712138816 0.0 20 1.404906777410785E-4 0.0 0.0 8.628656445501559 0.0 21 1.404906777410785E-4 0.0 0.0 8.861309007840784 0.0 22 1.404906777410785E-4 0.0 0.0 9.113770755741502 0.0 23 1.404906777410785E-4 0.0 0.0 9.379719608705365 0.0 24 5.61962710964314E-4 0.0 0.0 9.570786930433231 0.0 25 5.61962710964314E-4 0.0 0.0 9.720971464938444 0.0 26 5.61962710964314E-4 0.0 0.0 9.864833918945308 0.0 27 5.61962710964314E-4 0.0 0.0 10.03454665765653 0.0 28 5.61962710964314E-4 0.0 0.0 10.19442504892588 0.0 29 5.61962710964314E-4 0.0 0.0 10.372848209657048 0.0 30 5.61962710964314E-4 0.0 0.0 10.614211194016221 0.0 31 5.61962710964314E-4 0.0 0.0 10.799518397956703 0.0 32 5.61962710964314E-4 0.0 0.0 10.979486956143026 0.0 33 5.61962710964314E-4 0.0 0.0 11.150464110953918 0.0 34 5.61962710964314E-4 0.0 0.0 11.32411058864189 0.0 35 5.61962710964314E-4 0.0 0.0 11.527822071366455 0.0 36 5.61962710964314E-4 0.0 0.0 11.69922069821057 0.0 37 5.61962710964314E-4 0.0 0.0 11.871321778443392 0.0 38 5.61962710964314E-4 0.0 0.0 12.047356597652962 0.0 39 5.61962710964314E-4 0.0 0.0 12.23982882615824 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGCG 40 6.8084773E-9 45.000004 1 AGACTCG 20 7.031473E-4 45.000004 1 AAATCGA 20 7.031473E-4 45.000004 17 CGAGTTA 40 6.8084773E-9 45.000004 19 TTGGACG 20 7.031473E-4 45.000004 17 CGAGTCG 20 7.031473E-4 45.000004 28 CCGATAC 20 7.031473E-4 45.000004 14 CTATCCG 20 7.031473E-4 45.000004 1 TAGCGCG 20 7.031473E-4 45.000004 1 CGACCCA 20 7.031473E-4 45.000004 39 CCCACGT 20 7.031473E-4 45.000004 34 GCCGATA 20 7.031473E-4 45.000004 13 CCCCGTA 20 7.031473E-4 45.000004 24 TACGCCC 20 7.031473E-4 45.000004 15 GTTCGGC 20 7.031473E-4 45.000004 36 GTTCGAT 20 7.031473E-4 45.000004 18 CTACGTC 20 7.031473E-4 45.000004 2 TACGACG 20 7.031473E-4 45.000004 1 TGTTCGG 20 7.031473E-4 45.000004 2 AGCGCGT 20 7.031473E-4 45.000004 21 >>END_MODULE