SRR3548357_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548357_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	778923
Sequences flagged as poor quality	0
Sequence length	46
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	22032	2.828520919269299	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5420	0.6958325790867647	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4138	0.5312463491256517	No Hit
CTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTT	3927	0.5041576638512407	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2520	0.32352363455694594	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTAT	938	0.12042268619619655	No Hit
AATCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGT	918	0.11785503830288745	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGT	896	0.11503062562024743	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGGAT	40	1.9268555E-8	40.000004	29
AGCGTTC	25	7.7923345E-5	40.000004	33
TTCTAAC	40	1.9268555E-8	40.000004	33
AGCGTAA	20	0.0012555195	40.000004	16
TTGGCGC	20	0.0012555195	40.000004	25
GCCCAAT	20	0.0012555195	40.000004	38
ACCGGAT	20	0.0012555195	40.000004	27
GTCGATG	25	7.7923345E-5	40.000004	1
TCCGCCG	25	7.7923345E-5	40.000004	30
CTCGTAG	25	7.7923345E-5	40.000004	21
CGTATCA	25	7.7923345E-5	40.000004	31
CTACTCG	20	0.0012555195	40.000004	1
CTGTACG	20	0.0012555195	40.000004	21
GTCGAGA	25	7.7923345E-5	40.000004	12
TCCGATC	25	7.7923345E-5	40.000004	31
TAGACCG	20	0.0012555195	40.000004	24
AGCCCGT	50	7.8216544E-11	40.000004	15
TCACACG	50	7.8216544E-11	40.000004	1
GTTTACG	25	7.7923345E-5	40.000004	1
TTTAACG	50	7.8216544E-11	40.000004	1