##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548357_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 778923 Sequences flagged as poor quality 0 Sequence length 46 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.960510859224854 31.0 31.0 34.0 28.0 34.0 2 31.248534194008908 31.0 31.0 34.0 28.0 34.0 3 31.442227280488574 31.0 31.0 34.0 28.0 34.0 4 35.41253885172218 37.0 35.0 37.0 33.0 37.0 5 34.979836261093844 37.0 35.0 37.0 32.0 37.0 6 35.11251946598059 36.0 35.0 37.0 32.0 37.0 7 35.0089020352461 37.0 35.0 37.0 32.0 37.0 8 35.43532801059925 37.0 35.0 37.0 33.0 37.0 9 36.714115515911075 39.0 37.0 39.0 32.0 39.0 10 36.07224077347825 37.0 35.0 39.0 31.0 39.0 11 36.293939195530236 38.0 35.0 39.0 32.0 39.0 12 36.06619781416135 37.0 35.0 39.0 32.0 39.0 13 35.67645710808385 37.0 35.0 39.0 30.0 39.0 14 36.85487782489412 39.0 35.0 40.0 31.0 41.0 15 36.82586853899551 38.0 35.0 40.0 31.0 41.0 16 36.703531671294854 38.0 35.0 40.0 31.0 41.0 17 36.6828287263311 38.0 35.0 40.0 31.0 41.0 18 36.49221553349946 38.0 35.0 40.0 31.0 41.0 19 36.68845701051323 38.0 35.0 40.0 31.0 41.0 20 36.412632570870294 38.0 35.0 40.0 31.0 41.0 21 36.44795827058644 38.0 35.0 40.0 31.0 41.0 22 36.56349215519377 38.0 35.0 40.0 31.0 41.0 23 36.34170129781763 38.0 35.0 40.0 31.0 41.0 24 35.95672229475827 38.0 34.0 40.0 30.0 41.0 25 36.12230477210199 38.0 35.0 40.0 30.0 41.0 26 36.14126300032224 38.0 35.0 40.0 30.0 41.0 27 35.98924925827072 38.0 34.0 40.0 30.0 41.0 28 35.988093816718724 38.0 35.0 40.0 30.0 41.0 29 35.64694456319816 38.0 34.0 40.0 29.0 41.0 30 35.65548584391525 38.0 34.0 40.0 29.0 41.0 31 35.54190208788288 38.0 34.0 40.0 29.0 41.0 32 35.509402084673326 38.0 34.0 40.0 29.0 41.0 33 35.42446044089082 38.0 34.0 40.0 28.0 41.0 34 35.33371591286944 38.0 34.0 40.0 27.0 41.0 35 35.10324512178996 38.0 34.0 40.0 27.0 41.0 36 35.03623849854222 37.0 34.0 40.0 26.0 41.0 37 34.84957948346627 37.0 34.0 40.0 25.0 41.0 38 34.676670222859 37.0 33.0 40.0 25.0 41.0 39 34.653696193333616 37.0 33.0 40.0 24.0 41.0 40 34.454675237475335 37.0 33.0 40.0 24.0 41.0 41 34.4774066242748 37.0 33.0 40.0 24.0 41.0 42 34.35401060181815 37.0 33.0 40.0 23.0 41.0 43 34.25481337693199 37.0 33.0 40.0 23.0 41.0 44 34.09608651946341 36.0 33.0 40.0 23.0 41.0 45 33.904949526461536 36.0 33.0 40.0 23.0 41.0 46 32.911362227075074 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 11.0 10 16.0 11 18.0 12 13.0 13 33.0 14 28.0 15 54.0 16 93.0 17 219.0 18 427.0 19 859.0 20 1480.0 21 2500.0 22 3925.0 23 5459.0 24 7179.0 25 8612.0 26 9997.0 27 11391.0 28 12991.0 29 16292.0 30 20351.0 31 26242.0 32 34104.0 33 47531.0 34 75822.0 35 85377.0 36 77728.0 37 102756.0 38 138119.0 39 89291.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.136107163352474 33.459019697710815 18.80802081848912 26.596852320447596 2 24.58985034464254 34.45667928665606 18.624562376512184 22.328907992189215 3 21.315072221516118 35.09615199448469 18.212069742452076 25.37670604154711 4 19.393059390979598 36.248383986607145 18.022192180741868 26.336364441671385 5 17.389652122225176 38.05600810349675 17.126083065976996 27.42825670830108 6 19.17776211512563 42.338844789536324 18.213867095977395 20.269525999360656 7 78.4533259385074 13.632284577551312 4.167420913235326 3.7469685707059623 8 79.51402128323338 12.655551318936531 4.0916753003827075 3.738752097447373 9 73.0549746252197 16.075915077613576 6.652005397195872 4.217104899970857 10 37.135249568956105 37.660975475111144 11.526556540248523 13.67721841568422 11 29.554012399171675 35.6145601041438 21.129046131645875 13.702381365038649 12 28.65597754848682 33.519359423203575 23.13746031379225 14.687202714517353 13 22.985583940903016 40.393337980776025 20.883578993045525 15.737499085275438 14 18.03438850823509 41.12678660149977 24.40395263716696 16.434872253098188 15 16.597789511928653 36.185861760405075 31.45176095711643 15.764587770549848 16 17.850031389495495 35.55691640893901 29.5334712160252 17.05958098554029 17 17.783914456242787 32.845480233604604 25.114164044456256 24.256441265696353 18 20.70153275740991 34.08026210549695 24.906826477071547 20.311378660021596 19 22.782739757331598 36.639565143152794 23.061201171360967 17.516493928154645 20 24.570207838258725 34.84914426714836 21.730389268258865 18.850258626334053 21 20.746980125121482 36.27316178877758 24.11085563014573 18.86900245595521 22 21.755808982402623 33.71450066309507 23.125135603904365 21.40455475059794 23 19.133470188966047 38.136760629741325 20.70859378911651 22.021175392176122 24 17.75220400476042 34.928998116630275 26.486828608219298 20.83196927039001 25 19.12717945162744 36.75896077019166 24.279293331946803 19.834566446234096 26 20.188388325932088 39.34548087551658 21.858386515740325 18.60774428281101 27 17.04289127423378 39.36717750021504 23.867057462676026 19.72287376287515 28 19.944461776067723 37.66341474060979 25.112623455720268 17.279500027602214 29 20.081959320754425 36.70054678061888 25.00889048083058 18.20860341779611 30 21.168844673992165 36.32926489524638 24.01919060035459 18.482699830406858 31 22.334171670370498 38.46567632487422 20.295587625477744 18.90456437927754 32 25.058446085171447 35.902521815378414 21.65823836245688 17.380793736993258 33 24.23898126002185 35.893663430146496 22.010262888629555 17.857092421202093 34 21.527416702292783 36.05927671926493 23.646624891035444 18.76668168740684 35 22.00140450339764 36.504378481570065 23.554959861244306 17.939257153787988 36 23.94126248679266 35.55948405683232 23.702471232714913 16.796782223660106 37 20.781258224497158 38.36438261548317 22.657438540138113 18.196920619881553 38 22.391686983180623 36.52646025345253 22.720731060708182 18.36112170265867 39 22.87761434698937 34.12943256265382 23.627624296624955 19.36532879373186 40 23.981446176322947 34.73128922884547 22.58387542799481 18.70338916683677 41 20.20777406752657 33.11200208493009 24.84879763468276 21.831426212860578 42 25.58917890471844 33.45516822587085 22.049291136607856 18.906361732802857 43 23.545202799249733 33.18684902102005 24.22819713886995 19.039751040860263 44 21.813452677607415 34.53447901782333 24.240008319179175 19.412059985390083 45 22.195775448921136 37.04923336453025 22.259966646253865 18.49502454029474 46 21.228157340327606 34.68147685971527 25.396091783141593 18.694274016815527 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 25567.0 1 20154.5 2 14742.0 3 9911.0 4 5080.0 5 4706.5 6 4333.0 7 4333.0 8 4199.5 9 4066.0 10 4298.0 11 4530.0 12 4691.0 13 4852.0 14 4785.5 15 4719.0 16 4618.5 17 4518.0 18 4768.5 19 5019.0 20 5019.0 21 4955.5 22 4892.0 23 5242.0 24 5592.0 25 6290.5 26 6989.0 27 9329.5 28 11670.0 29 13706.5 30 15743.0 31 15743.0 32 16336.0 33 16929.0 34 18121.5 35 19314.0 36 23425.0 37 27536.0 38 29862.0 39 32188.0 40 38582.0 41 44976.0 42 49859.5 43 54743.0 44 54743.0 45 60323.5 46 65904.0 47 71846.5 48 77789.0 49 73291.5 50 68794.0 51 63424.0 52 58054.0 53 51355.0 54 44656.0 55 39723.0 56 34790.0 57 34790.0 58 31193.5 59 27597.0 60 25712.5 61 23828.0 62 21044.5 63 18261.0 64 16096.5 65 13932.0 66 12441.0 67 10950.0 68 9502.0 69 8054.0 70 8054.0 71 5651.5 72 3249.0 73 2653.5 74 2058.0 75 1583.0 76 1108.0 77 840.5 78 573.0 79 733.0 80 893.0 81 893.0 82 578.0 83 263.0 84 171.5 85 80.0 86 62.5 87 45.0 88 35.0 89 25.0 90 18.5 91 12.0 92 9.0 93 6.0 94 6.0 95 4.5 96 3.0 97 1.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 778923.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.625949091896835 #Duplication Level Percentage of deduplicated Percentage of total 1 77.14391285100326 18.22598157767529 2 9.654498334037527 4.561933722955469 3 3.490498110371929 2.4739899198302786 4 1.8248809892873994 1.7245818140669773 5 1.1716362694173528 1.384050942773715 6 0.8076769875525744 1.1449281234368232 7 0.5142443076828848 0.8504656883879494 8 0.4169426447823342 0.7880532559894602 9 0.3042426231485166 0.6469218653482806 >10 2.897541001735102 15.37537961759649 >50 0.9423810620416593 16.2872471560293 >100 0.824992922795449 30.960500898234617 >500 0.0038219394173184267 0.6693583619191517 >1k 0.0016379740359936115 1.3654188207581848 >5k 5.459913453312039E-4 0.6991563541340917 >10k+ 5.459913453312039E-4 2.8420318808638947 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 22032 2.828520919269299 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5420 0.6958325790867647 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4138 0.5312463491256517 No Hit CTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTT 3927 0.5041576638512407 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2520 0.32352363455694594 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTAT 938 0.12042268619619655 No Hit AATCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGT 918 0.11785503830288745 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGT 896 0.11503062562024743 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.2838239466545474E-4 0.0 0.0 0.5777207759945463 0.0 2 1.2838239466545474E-4 0.0 0.0 0.7367865629850447 0.0 3 1.2838239466545474E-4 0.0 0.0 0.9163935331220159 0.0 4 1.2838239466545474E-4 0.0 0.0 1.756913070996748 0.0 5 1.2838239466545474E-4 0.0 0.0 1.8986472347074101 0.0 6 1.2838239466545474E-4 0.0 0.0 2.6661171900174985 0.0 7 1.2838239466545474E-4 0.0 0.0 3.217904722289623 0.0 8 1.2838239466545474E-4 0.0 0.0 3.6920209057891475 0.0 9 1.2838239466545474E-4 0.0 0.0 4.464369392096523 0.0 10 1.2838239466545474E-4 0.0 0.0 5.639710215258761 0.0 11 1.2838239466545474E-4 0.0 0.0 6.744312338960333 0.0 12 1.2838239466545474E-4 0.0 0.0 7.297126930389782 0.0 13 1.2838239466545474E-4 0.0 0.0 7.561209516216622 0.0 14 1.2838239466545474E-4 0.0 0.0 7.820028423862179 0.0 15 1.2838239466545474E-4 0.0 0.0 8.000534070761809 0.0 16 2.567647893309095E-4 0.0 0.0 8.413925381584573 0.0 17 2.567647893309095E-4 0.0 0.0 8.860310967836359 0.0 18 2.567647893309095E-4 0.0 0.0 9.483222346753145 0.0 19 2.567647893309095E-4 0.0 0.0 9.73189904522013 0.0 20 2.567647893309095E-4 0.0 0.0 10.043996646651852 0.0 21 2.567647893309095E-4 0.0 0.0 10.335167917753102 0.0 22 2.567647893309095E-4 0.0 0.0 10.625697276881027 0.0 23 5.13529578661819E-4 0.0 0.0 10.936511054366093 0.0 24 8.986767626581832E-4 0.0 0.0 11.15322053656138 0.0 25 8.986767626581832E-4 0.0 0.0 11.338861479247628 0.0 26 8.986767626581832E-4 0.0 0.0 11.5184684493846 0.0 27 8.986767626581832E-4 0.0 0.0 11.729400723819941 0.0 28 8.986767626581832E-4 0.0 0.0 11.920433727082138 0.0 29 8.986767626581832E-4 0.0 0.0 12.121994086706902 0.0 30 8.986767626581832E-4 0.0 0.0 12.45309228254911 0.0 31 8.986767626581832E-4 0.0 0.0 12.661200144301812 0.0 32 8.986767626581832E-4 0.0 0.0 12.859422561665273 0.0 33 8.986767626581832E-4 0.0 0.0 13.064192481156674 0.0 34 8.986767626581832E-4 0.0 0.0 13.264340634440117 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGGAT 40 1.9268555E-8 40.000004 29 AGCGTTC 25 7.7923345E-5 40.000004 33 TTCTAAC 40 1.9268555E-8 40.000004 33 AGCGTAA 20 0.0012555195 40.000004 16 TTGGCGC 20 0.0012555195 40.000004 25 GCCCAAT 20 0.0012555195 40.000004 38 ACCGGAT 20 0.0012555195 40.000004 27 GTCGATG 25 7.7923345E-5 40.000004 1 TCCGCCG 25 7.7923345E-5 40.000004 30 CTCGTAG 25 7.7923345E-5 40.000004 21 CGTATCA 25 7.7923345E-5 40.000004 31 CTACTCG 20 0.0012555195 40.000004 1 CTGTACG 20 0.0012555195 40.000004 21 GTCGAGA 25 7.7923345E-5 40.000004 12 TCCGATC 25 7.7923345E-5 40.000004 31 TAGACCG 20 0.0012555195 40.000004 24 AGCCCGT 50 7.8216544E-11 40.000004 15 TCACACG 50 7.8216544E-11 40.000004 1 GTTTACG 25 7.7923345E-5 40.000004 1 TTTAACG 50 7.8216544E-11 40.000004 1 >>END_MODULE