SRR3548354_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548354_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1185540
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	18237	1.5382863505238118	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4292	0.3620291175329386	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3633	0.30644263373652514	No Hit
CTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGCT	2579	0.2175379995613813	Illumina Single End Adapter 2 (95% over 21bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2575	0.21720060057020427	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGT	2217	0.18700339085986134	No Hit
AATCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCT	2024	0.17072388953557027	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCC	1975	0.16659075189365186	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1195	0.10079794861413363	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	35	1.2119744E-7	45.0	1
TTAGGCG	25	3.8908798E-5	45.0	1
AGCGTAA	25	3.8908798E-5	45.0	24
ACTATCG	35	1.2119744E-7	45.0	1
AACCGCA	40	6.8157533E-9	45.0	1
TCGCATA	25	3.8908798E-5	45.0	30
CGAGTGA	20	7.033377E-4	45.0	24
TTTACGT	35	1.2119744E-7	45.0	38
CGAAACG	20	7.033377E-4	45.0	1
CGCATGT	40	6.8157533E-9	45.0	1
GAATCGT	25	3.8908798E-5	45.0	26
CGACCGA	35	1.2119744E-7	45.0	13
ATTAACG	35	1.2119744E-7	45.0	1
CAATTCG	20	7.033377E-4	45.0	1
TAAGTCG	25	3.8908798E-5	45.0	1
TCGATAG	20	7.033377E-4	45.0	1
ATCGTAG	85	0.0	45.0	1
CTACGTG	25	3.8908798E-5	45.0	1
ATATACG	45	3.8562575E-10	45.0	1
CACTACG	50	2.1827873E-11	45.0	1