SRR3548353_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548353_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1279597
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	23386	1.8276066605345278	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5797	0.4530332596903557	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4678	0.36558385179083724	No Hit
CTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTT	4377	0.3420608207115209	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3206	0.2505476333564396	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTAT	1950	0.15239172958361108	No Hit
AATCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGT	1869	0.14606161158552264	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAATAGGGGTCGT	1662	0.12988464336818545	No Hit
TCTACTGGGATACAAACACATACACACACACACATACACATATACA	1595	0.1246486198389024	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTT	1320	0.1031574784873675	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	50	7.8216544E-11	40.000004	1
AACCGTA	30	4.8679467E-6	40.000004	32
ACTATCG	30	4.8679467E-6	40.000004	1
CGTATTC	25	7.795148E-5	40.000004	12
CGAAACG	50	7.8216544E-11	40.000004	1
ATAGCCG	60	0.0	40.000004	1
ACCGAAC	25	7.795148E-5	40.000004	10
TACGGCA	30	4.8679467E-6	40.000004	19
TAGCCGT	30	4.8679467E-6	40.000004	40
CCGTACT	25	7.795148E-5	40.000004	20
CTCGGTA	30	4.8679467E-6	40.000004	31
GTCGTGA	25	7.795148E-5	40.000004	9
ACCACGT	25	7.795148E-5	40.000004	9
CGTAAAC	30	4.8679467E-6	40.000004	25
GCGCTAT	30	4.8679467E-6	40.000004	27
TATCGAG	25	7.795148E-5	40.000004	1
ATACCCG	25	7.795148E-5	40.000004	37
CTAGACG	35	3.056739E-7	40.0	1
GTACCGT	20	0.0012558224	40.0	34
ACCGGAC	20	0.0012558224	40.0	32