SRR3548351_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548351_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1113687
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	20608	1.8504301477883824	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5231	0.46970109195851256	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4196	0.37676654212539074	No Hit
CTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTT	3298	0.2961334737677642	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2448	0.2198104135183404	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTAT	1637	0.1469892348568314	No Hit
AATCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGT	1614	0.1449240226383176	No Hit
AGCACAGGGAAACCAGAAGACCAACACGCGGGCGACCGCGCGGGGG	1491	0.13387962686104804	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGT	1210	0.10864812106094442	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGATG	75	0.0	40.000004	5
CAGGTCG	25	7.794498E-5	40.0	33
TAGAGTA	20	0.001255752	40.0	15
AAGTAGT	20	0.001255752	40.0	36
CTATGCG	50	7.8216544E-11	40.0	1
AGCGTAA	25	7.794498E-5	40.0	11
TCGTTAC	20	0.001255752	40.0	36
CTCACCG	50	7.8216544E-11	40.0	1
TCACCGA	25	7.794498E-5	40.0	25
CTACTCG	30	4.8673774E-6	40.0	14
GGTAAGT	30	4.8673774E-6	40.0	5
ATCTAAT	40	1.9281288E-8	40.0	12
CGAAATG	45	1.2223609E-9	40.0	1
CGAAATA	20	0.001255752	40.0	13
CGAAAGA	40	1.9281288E-8	40.0	15
CGAAACG	90	0.0	40.0	1
GCGAATC	20	0.001255752	40.0	21
CTATCGC	20	0.001255752	40.0	33
GACACGT	50	7.8216544E-11	40.0	10
TAGGTAC	25	7.794498E-5	40.0	35