SRR3548350_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548350_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	602302
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19902	3.30432241632935	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGT	5548	0.9211325879708185	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4835	0.8027534359839417	No Hit
AATCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCT	4427	0.7350133321821943	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4057	0.6735823556953157	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCC	4021	0.6676052877128086	No Hit
CTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT	3416	0.5671573396734528	Illumina Single End Adapter 1 (95% over 22bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2639	0.4381522890510076	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTT	1392	0.23111329532360841	No Hit
ATCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCTTCTCTGCTC	1032	0.17134261549853727	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCT	1008	0.1673579035101992	No Hit
AAACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCT	699	0.11605473666034646	TruSeq Adapter, Index 23 (95% over 22bp)
AAAAACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTT	635	0.10542883802477827	No Hit
AACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTG	621	0.10310442269824771	TruSeq Adapter, Index 23 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAG	25	3.888586E-5	45.000004	1
TGAAGCG	25	3.888586E-5	45.000004	1
GCGCCCG	25	3.888586E-5	45.000004	13
CGATTGG	25	3.888586E-5	45.000004	2
CCGACAG	25	3.888586E-5	45.000004	1
TAGTGCG	25	3.888586E-5	45.000004	1
CGTCCTA	25	3.888586E-5	45.000004	32
TTCGAGT	25	3.888586E-5	45.000004	14
ATCGCAT	25	3.888586E-5	45.000004	20
GACTCGT	25	3.888586E-5	45.000004	9
GTCGGTG	25	3.888586E-5	45.000004	2
TATCCGG	85	0.0	45.000004	2
GCGAGAC	20	7.030609E-4	45.0	21
CGTGGTT	20	7.030609E-4	45.0	38
CTAGACG	20	7.030609E-4	45.0	1
CGGGTCG	20	7.030609E-4	45.0	6
CGGAACC	20	7.030609E-4	45.0	6
TCGTTCG	20	7.030609E-4	45.0	45
GTCGCGG	40	6.8066583E-9	45.0	20
GTCGCAT	20	7.030609E-4	45.0	45