##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548350_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 602302 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.02869324690936 31.0 31.0 33.0 28.0 34.0 2 31.17864626051383 31.0 31.0 34.0 28.0 34.0 3 31.415705078183368 31.0 31.0 34.0 30.0 34.0 4 35.34887149635897 37.0 35.0 37.0 33.0 37.0 5 34.91075407353786 35.0 35.0 37.0 32.0 37.0 6 34.86860246188789 35.0 35.0 37.0 32.0 37.0 7 34.04274931844822 35.0 35.0 37.0 30.0 37.0 8 34.40066445072406 36.0 35.0 37.0 31.0 37.0 9 35.529644596896574 38.0 35.0 39.0 30.0 39.0 10 35.23489047022922 37.0 34.0 39.0 29.0 39.0 11 35.646006488439355 37.0 35.0 39.0 30.0 39.0 12 35.48023250794452 37.0 35.0 39.0 30.0 39.0 13 35.302746794797294 37.0 35.0 39.0 30.0 39.0 14 36.30689089526516 38.0 35.0 40.0 30.0 41.0 15 36.451535940441836 38.0 35.0 40.0 31.0 41.0 16 36.403309303306315 38.0 35.0 40.0 31.0 41.0 17 36.34769932691573 38.0 35.0 40.0 31.0 41.0 18 36.07389316323041 37.0 35.0 40.0 30.0 41.0 19 35.90291747329413 37.0 34.0 40.0 30.0 41.0 20 35.83028945612002 37.0 34.0 40.0 30.0 41.0 21 35.87656690497458 37.0 34.0 40.0 30.0 41.0 22 35.831410156366736 37.0 34.0 40.0 30.0 41.0 23 35.68817470305594 37.0 34.0 40.0 29.0 41.0 24 35.28086408479467 37.0 34.0 40.0 27.0 41.0 25 35.35209745277286 37.0 34.0 40.0 28.0 41.0 26 35.2738509916952 37.0 34.0 40.0 27.0 41.0 27 35.084675129752185 37.0 33.0 40.0 27.0 41.0 28 35.059911805041324 37.0 33.0 40.0 27.0 41.0 29 34.8461967584368 37.0 33.0 40.0 26.0 41.0 30 34.87293749647187 37.0 33.0 40.0 26.0 41.0 31 34.65712549518348 37.0 33.0 40.0 25.0 41.0 32 34.57160361413377 37.0 33.0 40.0 25.0 41.0 33 34.47639556235908 37.0 33.0 40.0 24.0 41.0 34 34.439427396887275 37.0 33.0 40.0 24.0 41.0 35 34.31491344873502 37.0 33.0 40.0 24.0 41.0 36 34.189292082709336 37.0 33.0 40.0 23.0 41.0 37 34.01551049141461 36.0 33.0 40.0 23.0 41.0 38 33.92014803205036 36.0 33.0 40.0 23.0 41.0 39 33.72370007072864 36.0 33.0 40.0 21.0 41.0 40 33.48444468057553 36.0 33.0 40.0 21.0 41.0 41 33.47780681452162 36.0 33.0 40.0 21.0 41.0 42 33.36756809706758 36.0 33.0 40.0 20.0 41.0 43 33.34648565005595 36.0 33.0 39.0 20.0 41.0 44 33.21837051844424 35.0 32.0 39.0 20.0 40.0 45 33.01401290382566 35.0 32.0 39.0 20.0 40.0 46 32.86681598267978 35.0 31.0 39.0 18.0 40.0 47 32.75140378082756 35.0 31.0 39.0 18.0 40.0 48 32.635051851064745 35.0 31.0 39.0 18.0 40.0 49 32.49133325142537 35.0 31.0 39.0 15.0 40.0 50 32.27068314566447 35.0 31.0 39.0 15.0 40.0 51 30.186122576381948 34.0 27.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 3.0 11 8.0 12 15.0 13 21.0 14 46.0 15 78.0 16 204.0 17 443.0 18 969.0 19 1784.0 20 2912.0 21 4292.0 22 5658.0 23 7141.0 24 8214.0 25 8724.0 26 9807.0 27 11134.0 28 13146.0 29 15995.0 30 19661.0 31 25001.0 32 32486.0 33 42509.0 34 63387.0 35 66305.0 36 61211.0 37 75931.0 38 84242.0 39 40971.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.02152076533035 39.10098256356446 19.011891044691865 22.865605626413327 2 17.76517428134059 39.67195858556007 20.7351129499819 21.827754183117438 3 17.78459975228374 37.39685406988521 20.984655538251577 23.83389063957948 4 19.716686977629163 37.38058316259949 17.504673735102987 25.398056124668354 5 15.72632998064094 41.47487473061687 16.856327888667145 25.94246740007505 6 18.090426397388683 41.70200331395213 20.328174238172878 19.8793960504863 7 71.79471427954746 18.53073707210004 5.457229097695176 4.217319550657312 8 74.99692845117566 15.212302134145329 3.769039451969278 6.0217299627097365 9 69.31572533380265 19.168623049566495 7.299992362635356 4.215659253995504 10 34.63196203897713 41.553406762720364 11.09443435353029 12.720196844772225 11 27.88302213839569 32.26354885090868 25.87373111827621 13.979697892419418 12 27.109157864327198 31.370143217190048 26.689600897888432 14.831098020594318 13 20.32269525918891 40.125219574233526 23.05421532719466 16.4978698393829 14 15.184243120560781 41.57083987766934 27.13788099657647 16.107036005193407 15 13.075666360065217 37.48601200062427 31.608395788159427 17.829925851151085 16 15.504514346623456 34.7279271860296 31.263884230834364 18.50367423651258 17 15.58038990406806 33.974318531235156 25.164286354685856 25.281005210010925 18 17.896337717623386 35.0375725134567 25.470611088789347 21.59547868013057 19 19.87607545716269 36.77557105903683 25.74107341499779 17.607280068802694 20 20.569581372799693 37.37942095493623 23.625523408522632 18.425474263741446 21 17.702415067524267 36.13967743756454 25.17192371933017 20.985983775581023 22 17.52293699838287 36.48003825323509 23.723148852236918 22.273875896145125 23 17.58868474619045 36.73705217648289 22.25345424720489 23.420808830121768 24 15.061713226919386 38.60222944635748 26.732934640761613 19.603122685961527 25 15.84985605227942 36.662172797035375 25.885187165242684 21.60278398544252 26 17.398414748747307 39.847285913046946 22.529561582063483 20.224737756142268 27 15.31158787452142 38.340566692456605 25.294287583305387 21.053557849716587 28 16.28800834133043 35.838167563780296 29.30290784357349 18.570916251315786 29 15.522611580237156 36.52088155111555 27.92535970327178 20.03114716537551 30 17.265591015802702 35.54047637231821 25.9678699390007 21.226062672878392 31 21.74839200268304 36.47090662159515 24.045080374961397 17.735621000760414 32 19.91642066604461 33.96468881059668 22.60377684284628 23.515113680512435 33 20.20531228519912 35.0772536036739 25.585669647452608 19.13176446367437 34 17.4502160045957 33.56488937443343 26.057858018070668 22.927036602900206 35 16.673031137203594 32.31036921677165 26.641452294696016 24.375147351328735 36 21.001756593868194 30.681618191538462 29.46578294609681 18.850842268496535 37 17.880564899336214 33.79301413576578 24.43358979382436 23.89283117107365 38 19.16281201125017 32.54098442309672 27.4447038196785 20.85149974597461 39 20.001427855129155 31.302735172720663 26.392573825091066 22.303263147059116 40 21.330993421904626 30.98777689597577 24.272042928630487 23.409186753489113 41 18.83639768753881 29.13588199939565 28.69225073136068 23.33546958170486 42 22.385945920817132 30.163605633054512 23.899140298388517 23.55130814773984 43 20.029652898379883 30.053361934710495 26.571221745901557 23.345763421008066 44 19.677670006076685 30.868235536325635 25.486383907076515 23.96771055052117 45 20.72813970400231 34.43156423189696 24.542837314171294 20.297458749929437 46 18.807010436624815 31.369147039192963 29.678632978140534 20.145209546041688 47 19.97818370186385 32.02762069526583 25.659552848903044 22.33464275396728 48 21.037785031429415 27.646761923420478 30.115291000195914 21.200162044954194 49 20.04044482668163 27.32150980737238 27.791041703331555 24.847003662614437 50 19.163144070582533 30.1646018110516 25.523906611633368 25.148347506732506 51 17.664062214636512 30.469432278159463 28.267712874936496 23.598792632267536 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 23310.0 1 18159.0 2 13008.0 3 8506.0 4 4004.0 5 3541.0 6 3078.0 7 3312.5 8 3547.0 9 3742.5 10 3938.0 11 4397.5 12 4857.0 13 4886.5 14 4916.0 15 4850.5 16 4785.0 17 4744.5 18 4704.0 19 4594.5 20 4485.0 21 4457.0 22 4429.0 23 4281.5 24 4134.0 25 4507.0 26 4900.5 27 4921.0 28 6611.5 29 8302.0 30 9378.5 31 10455.0 32 10836.5 33 11218.0 34 13109.0 35 15000.0 36 16561.5 37 18123.0 38 19230.5 39 20338.0 40 23170.5 41 26003.0 42 31880.5 43 37758.0 44 49058.5 45 60359.0 46 60231.5 47 60104.0 48 56101.5 49 52099.0 50 47007.5 51 41916.0 52 39207.0 53 36498.0 54 31299.0 55 26100.0 56 22928.0 57 19756.0 58 17619.5 59 15483.0 60 14759.0 61 14035.0 62 12518.5 63 11002.0 64 9799.0 65 8596.0 66 6988.5 67 5381.0 68 4540.5 69 3700.0 70 3463.0 71 3226.0 72 2429.5 73 1633.0 74 1262.5 75 703.5 76 515.0 77 483.5 78 452.0 79 304.0 80 156.0 81 120.0 82 84.0 83 71.0 84 58.0 85 38.0 86 18.0 87 14.5 88 11.0 89 10.0 90 9.0 91 8.5 92 8.0 93 8.0 94 8.0 95 6.0 96 4.0 97 5.0 98 6.0 99 3.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 602302.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.65951067444314 #Duplication Level Percentage of deduplicated Percentage of total 1 79.81455941393955 25.268898957415953 2 8.914984449502999 5.644880906830696 3 3.199375413032938 3.038719801214017 4 1.6345678937964792 2.0699847872700667 5 0.9445602598776082 1.495215781512496 6 0.6814377918322105 1.29443922266885 7 0.4289268573427819 0.9505730093019407 8 0.34055752428303243 0.8625507660240475 9 0.2663688231273606 0.7589795939225578 >10 2.7503264245968913 19.401428280203998 >50 0.7156973519154074 16.12759173723009 >100 0.3011491846998309 13.902710914795557 >500 0.001604702582769969 0.3310733755411385 >1k 0.004814107748309907 4.543071839203132 >5k 5.34900860923323E-4 0.9395371291571544 >10k+ 5.34900860923323E-4 3.370343897708307 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 19902 3.30432241632935 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGT 5548 0.9211325879708185 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4835 0.8027534359839417 No Hit AATCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCT 4427 0.7350133321821943 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4057 0.6735823556953157 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCC 4021 0.6676052877128086 No Hit CTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT 3416 0.5671573396734528 Illumina Single End Adapter 1 (95% over 22bp) TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2639 0.4381522890510076 No Hit AATGACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTT 1392 0.23111329532360841 No Hit ATCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCTTCTCTGCTC 1032 0.17134261549853727 No Hit AATGATCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCT 1008 0.1673579035101992 No Hit AAACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCT 699 0.11605473666034646 TruSeq Adapter, Index 23 (95% over 22bp) AAAAACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTT 635 0.10542883802477827 No Hit AACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTG 621 0.10310442269824771 TruSeq Adapter, Index 23 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7614120491049341 0.0 2 0.0 0.0 0.0 0.9589873518600304 0.0 3 0.0 0.0 0.0 1.3025027311880086 0.0 4 0.0 0.0 0.0 3.287387390378913 0.0 5 0.0 0.0 0.0 3.5472238179517914 0.0 6 0.0 0.0 0.0 4.801577945947382 0.0 7 0.0 0.0 0.0 5.70710374529721 0.0 8 0.0 0.0 0.0 6.1884237475552135 0.0 9 0.0 0.0 0.0 8.018568757865655 0.0 10 0.0 0.0 0.0 9.292514386470575 0.0 11 0.0 0.0 0.0 11.252494595734365 0.0 12 0.0 0.0 0.0 11.93487652373726 0.0 13 0.0 0.0 0.0 12.285531178711013 0.0 14 0.0 0.0 0.0 12.642827020331993 0.0 15 0.0 0.0 0.0 12.892037549269304 0.0 16 0.0 0.0 0.0 13.390458607143925 0.0 17 0.0 0.0 0.0 13.941179009865483 0.0 18 0.0 0.0 0.0 14.864802042829012 0.0 19 0.0 0.0 0.0 15.18175267556807 0.0 20 0.0 0.0 0.0 15.595498603690507 0.0 21 0.0 0.0 0.0 15.93536133036251 0.0 22 0.0 0.0 0.0 16.325531045887278 0.0 23 0.0 0.0 0.0 16.711051930758988 0.0 24 0.0 0.0 0.0 16.972548654993673 0.0 25 0.0 0.0 0.0 17.201337534990753 0.0 26 0.0 0.0 0.0 17.425975673333312 0.0 27 0.0 0.0 0.0 17.668877074955752 0.0 28 0.0 0.0 0.0 17.90663155692659 0.0 29 0.0 0.0 0.0 18.156838263860987 0.0 30 0.0 0.0 0.0 18.527084419444066 0.0 31 1.6602966618075319E-4 0.0 0.0 18.78858114367875 0.0 32 1.6602966618075319E-4 0.0 0.0 19.018200172006733 0.0 33 1.6602966618075319E-4 0.0 0.0 19.247985230000896 0.0 34 1.6602966618075319E-4 0.0 0.0 19.489890453626256 0.0 35 1.6602966618075319E-4 0.0 0.0 19.74690437687406 0.0 36 1.6602966618075319E-4 0.0 0.0 20.013381991094167 0.0 37 1.6602966618075319E-4 0.0 0.0 20.259437956374043 0.0 38 1.6602966618075319E-4 0.0 0.0 20.497856557009605 0.0 39 1.6602966618075319E-4 0.0 0.0 20.757194895583943 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTAG 25 3.888586E-5 45.000004 1 TGAAGCG 25 3.888586E-5 45.000004 1 GCGCCCG 25 3.888586E-5 45.000004 13 CGATTGG 25 3.888586E-5 45.000004 2 CCGACAG 25 3.888586E-5 45.000004 1 TAGTGCG 25 3.888586E-5 45.000004 1 CGTCCTA 25 3.888586E-5 45.000004 32 TTCGAGT 25 3.888586E-5 45.000004 14 ATCGCAT 25 3.888586E-5 45.000004 20 GACTCGT 25 3.888586E-5 45.000004 9 GTCGGTG 25 3.888586E-5 45.000004 2 TATCCGG 85 0.0 45.000004 2 GCGAGAC 20 7.030609E-4 45.0 21 CGTGGTT 20 7.030609E-4 45.0 38 CTAGACG 20 7.030609E-4 45.0 1 CGGGTCG 20 7.030609E-4 45.0 6 CGGAACC 20 7.030609E-4 45.0 6 TCGTTCG 20 7.030609E-4 45.0 45 GTCGCGG 40 6.8066583E-9 45.0 20 GTCGCAT 20 7.030609E-4 45.0 45 >>END_MODULE