SRR3548348_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548348_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	740562
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19226	2.596136447724836	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGT	6547	0.8840583232734058	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCC	6246	0.8434135156813339	No Hit
AATCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCT	5174	0.6986585863168783	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4731	0.6388391518873504	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3743	0.5054269595253335	No Hit
CTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT	3235	0.43683040717725186	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2248	0.3035532473985973	No Hit
AATGACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTT	1343	0.18134875945565665	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCT	1169	0.1578530899506051	No Hit
AACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG	859	0.11599298910827183	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCTTAC	55	1.8189894E-12	45.000004	22
TCCTATC	30	2.1644519E-6	45.000004	43
ACGTAAG	30	2.1644519E-6	45.000004	1
TTCGCGT	30	2.1644519E-6	45.000004	32
GCGTATT	30	2.1644519E-6	45.000004	12
TCACGGA	20	7.0316595E-4	45.0	3
CGGGTCA	25	3.8894563E-5	45.0	6
CGGGTAT	25	3.8894563E-5	45.0	6
GCCCATA	20	7.0316595E-4	45.0	41
ACACGTA	45	3.8380676E-10	45.0	38
TCGCACG	20	7.0316595E-4	45.0	16
AGATCCG	50	2.1827873E-11	45.0	1
TACTTCG	20	7.0316595E-4	45.0	13
ATCTACG	25	3.8894563E-5	45.0	1
ACGTTAT	35	1.2111377E-7	45.0	32
GCGGTAG	20	7.0316595E-4	45.0	1
TCCGACA	45	3.8380676E-10	45.0	15
TCCGAAC	20	7.0316595E-4	45.0	31
ATTACCG	20	7.0316595E-4	45.0	1
ATAGCCG	25	3.8894563E-5	45.0	1