SRR3548346_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548346_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1086879
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11311	1.0406862217413346	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGT	4715	0.43381093939619775	No Hit
AATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCT	3800	0.3496249352503821	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCC	3685	0.3390441806309626	No Hit
CTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT	3247	0.29874530651526066	Illumina Single End Adapter 2 (95% over 21bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2744	0.252466005875539	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2106	0.19376581937823806	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1431	0.13166139009034125	No Hit
AATGACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTT	1170	0.10764767743235448	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTAGCG	35	1.2118471E-7	45.000004	1
GTAACGT	35	1.2118471E-7	45.000004	21
TTAGGCG	55	1.8189894E-12	45.0	1
TCGTTAC	20	7.033117E-4	45.0	43
TCCGCTA	20	7.033117E-4	45.0	37
GTCGATC	20	7.033117E-4	45.0	10
CGACGTC	20	7.033117E-4	45.0	27
CGACACG	40	6.8139343E-9	45.0	1
TACGCCC	25	3.8906655E-5	45.0	13
TCTACGG	25	3.8906655E-5	45.0	2
TCCCGTA	20	7.033117E-4	45.0	35
TTACGTA	20	7.033117E-4	45.0	20
CGTAACG	20	7.033117E-4	45.0	1
CAATGCG	20	7.033117E-4	45.0	1
TCGAGTA	20	7.033117E-4	45.0	37
ACGTAAC	20	7.033117E-4	45.0	38
TCATACG	20	7.033117E-4	45.0	1
ATCGGTC	20	7.033117E-4	45.0	36
GCGCTAT	20	7.033117E-4	45.0	22
TGTACGA	25	3.8906655E-5	45.0	11