SRR3548344_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548344_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	670325
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13430	2.0035057621303096	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGT	4610	0.6877261030097341	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCC	4127	0.6156715026293216	No Hit
AATCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCT	3606	0.5379480102935144	RNA PCR Primer, Index 27 (95% over 21bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3160	0.4714131205012494	No Hit
CTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTTCTGCT	2822	0.42098981837168536	RNA PCR Primer, Index 38 (95% over 24bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2776	0.4141274754783128	No Hit
TAGTTCGGGCGAATTGATTTTTTTAGTTATTTTTTATCATTTTCTTCAATG	1970	0.29388729347704473	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1422	0.21213590422556222	No Hit
AATGACTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCTT	1077	0.1606683325252676	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCGACTATGTCGTATGCCGTCT	857	0.12784843173087682	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCTT	40	6.8084773E-9	45.000004	28
AACCGCA	20	7.031179E-4	45.000004	1
GTCGCCC	20	7.031179E-4	45.000004	31
TCCGCAA	20	7.031179E-4	45.000004	31
CACGGAT	20	7.031179E-4	45.000004	4
GCGAATT	250	0.0	45.000004	9
GCGAATG	25	3.8890586E-5	45.000004	1
TAGACCG	20	7.031179E-4	45.000004	1
TGGACCG	20	7.031179E-4	45.000004	45
TAGCGTA	20	7.031179E-4	45.000004	23
GGCGTGA	20	7.031179E-4	45.000004	31
CGCATAC	20	7.031179E-4	45.000004	33
CACGATT	25	3.8890586E-5	45.000004	36
CGATTCC	20	7.031179E-4	45.000004	38
CGATTAC	25	3.8890586E-5	45.000004	38
TCGATCT	20	7.031179E-4	45.000004	39
CTGCGGT	25	3.8890586E-5	45.000004	27
TTCCCGC	20	7.031179E-4	45.000004	23
ACTAGCG	25	3.8890586E-5	45.000004	43
CCCGTAG	20	7.031179E-4	45.000004	1