SRR3548340_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548340_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	577494
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	9233	1.5988044897436164	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2252	0.38996076149708914	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1890	0.3272761275441823	No Hit
AATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	1326	0.2296127751976644	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1263	0.21870357094619167	No Hit
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT	1236	0.2140281976955605	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCC	1023	0.17714469760724785	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGT	1019	0.17645204971826547	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACAG	50	2.1827873E-11	45.000004	1
CTACTCG	25	3.8883856E-5	45.000004	14
GATCGAA	25	3.8883856E-5	45.000004	29
ACGCATT	25	3.8883856E-5	45.000004	16
CGGTTAG	25	3.8883856E-5	45.000004	1
GCACGGC	50	2.1827873E-11	45.000004	15
ATGTCGC	25	3.8883856E-5	45.000004	25
TGTGCGA	25	3.8883856E-5	45.000004	30
CGTTCAT	45	3.8380676E-10	45.000004	17
TACGCAC	25	3.8883856E-5	45.000004	33
TGCGATC	25	3.8883856E-5	45.000004	22
CTACGAC	25	3.8883856E-5	45.000004	23
CACTACC	50	2.1827873E-11	45.000004	18
TACGACA	25	3.8883856E-5	45.000004	24
CATACCG	45	3.8380676E-10	45.000004	1
AGTTATC	25	3.8883856E-5	45.000004	16
TATAGCG	25	3.8883856E-5	45.000004	1
TATGTCG	25	3.8883856E-5	45.000004	24
CCCGCTA	25	3.8883856E-5	45.000004	22
ATCCTAC	20	7.030369E-4	45.0	30