SRR3548339_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548339_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	620535
Sequences flagged as poor quality	0
Sequence length	46
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12246	1.9734583867146895	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3068	0.49441207989879704	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2407	0.38789109397536	No Hit
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT	2163	0.34857018540452994	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1598	0.25751972088600966	No Hit
AATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGT	1355	0.21835996357981421	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTAT	964	0.15534981910770546	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGT	912	0.1469699533467089	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGAGT	30	4.8638885E-6	40.000004	34
TTAGCGA	30	4.8638885E-6	40.000004	11
TAGCGTC	30	4.8638885E-6	40.000004	25
TAGCGAA	30	4.8638885E-6	40.000004	12
TGCGGTA	30	4.8638885E-6	40.000004	7
ACGGGTC	60	0.0	40.000004	5
ATCGTAC	30	4.8638885E-6	40.000004	33
TCTAACG	30	4.8638885E-6	40.000004	1
CCGAGTG	30	4.8638885E-6	40.000004	1
GTACTCA	30	4.8638885E-6	40.000004	36
CGTACTC	30	4.8638885E-6	40.000004	35
ACGCTAG	30	4.8638885E-6	40.000004	1
TAATGAC	30	4.8638885E-6	40.000004	40
TCACGGC	20	0.0012553221	40.0	6
CTTCGTT	25	7.790502E-5	40.0	16
ACAACGC	35	3.0533374E-7	40.0	39
GTGTTAG	20	0.0012553221	40.0	16
TATCACG	35	3.0533374E-7	40.0	1
CGGAATC	20	0.0012553221	40.0	15
CGGAATA	25	7.790502E-5	40.0	13