SRR3548338_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548338_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	782802
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12523	1.5997659689167887	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGT	4787	0.6115211764916288	No Hit
AATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT	4364	0.5574845235449066	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCC	3775	0.48224199733776874	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2811	0.3590946369580047	No Hit
CTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT	2513	0.3210262620688245	Illumina Single End Adapter 2 (95% over 21bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2154	0.2751653674875639	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1472	0.1880424424056147	No Hit
AATGACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTT	1186	0.15150702220995857	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT	868	0.11088372283157172	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCCCG	20	7.0319057E-4	45.000004	25
TCCGCGT	20	7.0319057E-4	45.000004	18
TCCGCGA	20	7.0319057E-4	45.000004	21
CTGTACG	20	7.0319057E-4	45.000004	1
CCGCTAG	20	7.0319057E-4	45.000004	1
TCCGTTA	40	6.8102963E-9	45.000004	10
TCCGTAA	20	7.0319057E-4	45.000004	22
TTACGCA	20	7.0319057E-4	45.000004	42
CGCAAAC	20	7.0319057E-4	45.000004	16
TTACCGC	20	7.0319057E-4	45.000004	10
CGATATA	20	7.0319057E-4	45.000004	37
GTAACGT	20	7.0319057E-4	45.000004	9
TACGTGC	30	2.1646101E-6	45.000004	27
GCGACGT	25	3.889661E-5	45.0	18
CTATACG	25	3.889661E-5	45.0	1
CACTACG	70	0.0	45.0	1
CCGACAA	25	3.889661E-5	45.0	24
AATCGTG	45	3.8380676E-10	45.0	1
AACTACG	65	0.0	41.53846	1
ATCGTTG	125	0.0	41.399998	23