SRR3548334_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548334_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	744107
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12208	1.640624265058654	No Hit
AATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT	3743	0.5030190550552541	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGT	3330	0.44751628462035703	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2621	0.3522342888858726	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCC	2614	0.3512935639632472	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2275	0.30573559985324694	No Hit
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	2107	0.2831582017102379	Illumina Single End Adapter 1 (95% over 21bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1506	0.20239024763911642	No Hit
AATGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC	969	0.13022320714628405	No Hit
AATGACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTT	842	0.11315576926436656	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCACGAC	20	7.0316804E-4	45.000004	38
ATTCGCA	20	7.0316804E-4	45.000004	13
CGATTAG	40	6.8102963E-9	45.000004	1
TATGCGT	35	1.2111559E-7	45.000004	38
CCGTCTA	20	7.0316804E-4	45.000004	40
CGTTAAG	35	1.2111559E-7	45.000004	1
AGTGCGT	20	7.0316804E-4	45.000004	29
TACTCGA	20	7.0316804E-4	45.000004	40
CAGTACG	35	1.2111559E-7	45.000004	1
AATACGC	20	7.0316804E-4	45.000004	1
GATAGTC	35	1.2111559E-7	45.000004	9
TACCGAA	20	7.0316804E-4	45.000004	26
TATCACG	25	3.8894752E-5	45.0	1
TCGCATC	25	3.8894752E-5	45.0	10
TCCGATA	25	3.8894752E-5	45.0	12
GACGTAT	25	3.8894752E-5	45.0	37
CGTTGGA	25	3.8894752E-5	45.0	28
CGCATAG	45	3.8380676E-10	45.0	1
CGACAGT	25	3.8894752E-5	45.0	18
AATTCCG	25	3.8894752E-5	45.0	1