SRR3548333_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548333_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	826879
Sequences flagged as poor quality	0
Sequence length	46
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15636	1.890965909159623	No Hit
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTT	3553	0.42968801964979153	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3526	0.42642272932315367	No Hit
AATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGT	3455	0.4178362251308837	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2973	0.3595447459664594	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTAT	2808	0.33959019397033907	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGT	2210	0.2672700600692483	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1891	0.22869125954341568	No Hit
AATGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCG	923	0.1116245544995096	No Hit
AACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTC	828	0.10013557001689487	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTATG	30	4.865855E-6	40.000004	1
ATTCACG	30	4.865855E-6	40.000004	1
CATAACG	30	4.865855E-6	40.000004	1
CACGTCG	30	4.865855E-6	40.000004	1
CTTAACA	20	0.0012555645	40.0	24
TTAGGTC	20	0.0012555645	40.0	20
CGAACTT	35	3.0549927E-7	40.0	6
ACGCCTA	20	0.0012555645	40.0	25
CCCTCGT	20	0.0012555645	40.0	39
GTCGATT	25	7.792755E-5	40.0	22
CGGCCTA	20	0.0012555645	40.0	39
TAGCGAG	45	1.2205419E-9	40.0	1
ATTACCG	45	1.2205419E-9	40.0	1
TCGATTA	25	7.792755E-5	40.0	23
TAACGAA	20	0.0012555645	40.0	14
CATTCGA	20	0.0012555645	40.0	13
CGTTCCC	25	7.792755E-5	40.0	38
CGTTATC	25	7.792755E-5	40.0	32
CGCCTAT	20	0.0012555645	40.0	16
ACGATAG	35	3.0549927E-7	40.0	1