##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548328_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 857091 Sequences flagged as poor quality 0 Sequence length 46 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.725763075332726 33.0 31.0 34.0 30.0 34.0 2 31.96824257867601 33.0 31.0 34.0 30.0 34.0 3 32.14421572505137 34.0 31.0 34.0 30.0 34.0 4 35.86600372655879 37.0 35.0 37.0 35.0 37.0 5 35.5533916468613 37.0 35.0 37.0 33.0 37.0 6 35.627646305934846 37.0 35.0 37.0 33.0 37.0 7 35.54025651885272 37.0 35.0 37.0 33.0 37.0 8 35.83938811631437 37.0 35.0 37.0 35.0 37.0 9 37.32553369478853 39.0 37.0 39.0 34.0 39.0 10 36.734377096481005 39.0 37.0 39.0 32.0 39.0 11 36.91912760722024 39.0 37.0 39.0 33.0 39.0 12 36.69454001967119 39.0 35.0 39.0 32.0 39.0 13 36.4916735795849 39.0 35.0 39.0 32.0 39.0 14 37.71954786597922 40.0 37.0 41.0 33.0 41.0 15 37.62313103276082 39.0 36.0 41.0 33.0 41.0 16 37.58661799038842 39.0 36.0 41.0 32.0 41.0 17 37.44778325755375 39.0 36.0 40.0 32.0 41.0 18 37.16657157758044 38.0 36.0 40.0 32.0 41.0 19 37.10349659487732 39.0 35.0 40.0 32.0 41.0 20 36.94095376103588 39.0 35.0 40.0 32.0 41.0 21 36.98966154118991 39.0 35.0 40.0 32.0 41.0 22 36.996643296919466 39.0 35.0 40.0 32.0 41.0 23 36.84733826396497 39.0 35.0 40.0 32.0 41.0 24 36.51844669935864 38.0 35.0 40.0 31.0 41.0 25 36.68421322823364 38.0 35.0 40.0 32.0 41.0 26 36.68266146768546 38.0 35.0 40.0 32.0 41.0 27 36.53577158084731 38.0 35.0 40.0 31.0 41.0 28 36.56713931192837 38.0 35.0 40.0 31.0 41.0 29 36.29789485597212 38.0 35.0 40.0 31.0 41.0 30 36.308425826429165 38.0 35.0 40.0 31.0 41.0 31 36.260742441584384 38.0 35.0 40.0 31.0 41.0 32 36.11534481169444 38.0 35.0 40.0 31.0 41.0 33 36.10293422752076 38.0 35.0 40.0 31.0 41.0 34 35.971595781544785 38.0 35.0 40.0 30.0 41.0 35 35.82257076553132 38.0 35.0 40.0 30.0 41.0 36 35.771349833331584 38.0 35.0 40.0 30.0 41.0 37 35.64986798367968 38.0 35.0 40.0 29.0 41.0 38 35.59019520681001 38.0 35.0 40.0 29.0 41.0 39 35.44279078884273 38.0 35.0 40.0 28.0 41.0 40 35.331137533820794 38.0 35.0 40.0 27.0 41.0 41 35.38503379454457 38.0 35.0 40.0 28.0 41.0 42 35.27263499441716 38.0 35.0 40.0 27.0 41.0 43 35.15564858340596 38.0 34.0 40.0 27.0 41.0 44 35.045066393183454 37.0 34.0 40.0 26.0 41.0 45 34.85594761816423 37.0 34.0 40.0 25.0 41.0 46 34.108937090693985 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 0.0 8 2.0 9 14.0 10 15.0 11 36.0 12 29.0 13 45.0 14 45.0 15 72.0 16 124.0 17 183.0 18 342.0 19 601.0 20 1136.0 21 1768.0 22 2683.0 23 3907.0 24 5234.0 25 6694.0 26 8387.0 27 9393.0 28 11026.0 29 13545.0 30 17094.0 31 21852.0 32 29498.0 33 41350.0 34 67098.0 35 104207.0 36 90979.0 37 101036.0 38 158455.0 39 160240.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.467732131127267 35.50521473215797 17.611082137135963 25.415970999578807 2 20.480205719112675 38.26058143184329 18.93964584857384 22.319567000470194 3 17.536177605411794 40.09562578536001 20.157836215757722 22.21036039347047 4 18.0347244341616 39.00507647379333 20.691151814684787 22.26904727736028 5 14.652469807756702 43.50704884312167 16.5003482710704 25.340133078051224 6 15.806256278504849 46.26964931378348 18.899276739576077 19.024817668135587 7 74.09866630264465 17.871614566014575 4.518540038338986 3.5111790930017936 8 75.08292585034728 17.24239316478647 3.8736843579036533 3.800996626962598 9 71.65796864043608 18.806987822763276 6.457774028662068 3.077269508138576 10 31.423384448092445 44.4537394512368 11.814148089292734 12.30872801137802 11 23.959416211347452 37.21926843240683 24.673342737235604 14.147972619010115 12 24.744047014844398 34.689082022795716 27.921189231948535 12.645681730411356 13 18.520787174290714 38.901936900515814 25.993155919266446 16.584120005927026 14 15.437683979880784 41.683321840971374 28.261643162744683 14.61735101640316 15 12.93398250594161 39.5966122617085 30.32980161966466 17.139603612685235 16 16.507348694596022 36.913933292964224 30.14464041741192 16.434077595027833 17 16.077756037573607 37.842189452461874 26.480152049198974 19.59990246076554 18 15.121731531424318 39.590195206810016 28.021528635815802 17.26654462594987 19 16.930524296719952 40.862638856317474 25.84171342366213 16.365123423300442 20 19.27764963113602 39.893313545469496 25.981721894174598 14.847314929219884 21 18.405280186117924 39.82762623805407 26.293357414790265 15.473736161037744 22 18.460116837068643 36.63146620370533 26.652829162831015 18.255587796395016 23 16.199446733194026 40.26398597115126 24.33195541663604 19.204611879018678 24 14.489476613335107 40.276586733497375 28.95211826982199 16.281818383345524 25 15.811506596149066 39.40235050887245 27.13924192413641 17.64690097084207 26 17.610148747332545 40.680044476024136 23.469736585730104 18.240070190913215 27 14.818379845313975 39.93134917995872 26.500569951148712 18.749701023578595 28 15.094429879674387 39.76030549848266 27.662756930127607 17.482507691715348 29 16.03365336936218 38.61841974772807 27.068537646527613 18.279389236382134 30 16.930640970445378 39.6647497173579 26.797271234909715 16.60733807728701 31 19.62183712114583 40.64515903212144 23.780438716542353 15.952565130190377 32 18.191650594860988 40.16866353747735 24.81323453402264 16.82645133363902 33 18.396763004161752 40.70011235679758 23.58326012057063 17.319864518470034 34 16.130842582642916 38.76659537902043 26.50360346800981 18.598958570326836 35 16.53290024046455 38.44422587566548 27.20026228253476 17.822611601335215 36 19.03146807048493 38.82236541977456 26.20153519287917 15.944631316861338 37 16.63860663570146 39.50467336607198 27.186378109208942 16.67034188901762 38 17.005895523345828 38.50664631876895 28.620998237060007 15.86645992082521 39 16.633122970606387 38.82084866134401 27.484129456498785 17.061898911550816 40 18.082210640410413 36.68875300289001 26.405947559827368 18.823088796872213 41 15.916046254131707 35.28050113698546 29.64621026238754 19.157242346495295 42 17.50467569954649 35.153560123720816 27.95152440055957 19.390239776173125 43 17.212408017351716 35.97319304484588 28.733938403273395 18.080460534529006 44 18.121296338428476 35.162193979402424 27.35077138833566 19.36573829383344 45 18.97966493639532 39.233406954454075 25.157072002856175 16.62985610629443 46 17.38706858431602 36.040980479319 29.08804315994451 17.483907776420473 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 64025.0 1 48419.0 2 32813.0 3 19783.0 4 6753.0 5 5538.5 6 4324.0 7 4324.0 8 4170.5 9 4017.0 10 4156.0 11 4295.0 12 4300.5 13 4306.0 14 5761.5 15 7217.0 16 6688.5 17 6160.0 18 6187.5 19 6215.0 20 6215.0 21 7419.5 22 8624.0 23 9498.0 24 10372.0 25 9860.5 26 9349.0 27 18624.5 28 27900.0 29 27708.0 30 27516.0 31 27516.0 32 31501.0 33 35486.0 34 37980.0 35 40474.0 36 39341.0 37 38208.0 38 45532.5 39 52857.0 40 51499.0 41 50141.0 42 47838.0 43 45535.0 44 45535.0 45 50938.5 46 56342.0 47 58064.5 48 59787.0 49 58128.0 50 56469.0 51 50893.5 52 45318.0 53 40093.5 54 34869.0 55 32260.0 56 29651.0 57 29651.0 58 26044.5 59 22438.0 60 20070.5 61 17703.0 62 16120.0 63 14537.0 64 12531.0 65 10525.0 66 9226.5 67 7928.0 68 6823.5 69 5719.0 70 5719.0 71 4677.5 72 3636.0 73 3046.0 74 2456.0 75 1901.0 76 1346.0 77 1123.5 78 901.0 79 670.5 80 440.0 81 440.0 82 363.0 83 286.0 84 180.0 85 74.0 86 66.0 87 58.0 88 33.0 89 8.0 90 7.5 91 7.0 92 6.5 93 6.0 94 6.0 95 3.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 857091.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.01061786620322 #Duplication Level Percentage of deduplicated Percentage of total 1 75.29637732290718 13.561342786723307 2 10.511066321445648 3.7862159776375184 3 3.8624139990074595 2.0869338773159147 4 1.9328603802148465 1.3924803878709544 5 1.0692380144585754 0.9628818643215636 6 0.7219652194187238 0.7801823807784116 7 0.563287025960026 0.7101603161489283 8 0.40859209457396245 0.5887196862818562 9 0.35230512165943895 0.5710709626662951 >10 3.3891705184516825 14.353966475097529 >50 1.198898753323349 15.33061251151097 >100 0.5942424331076099 20.524984474880952 >500 0.07940588919948348 9.775303731657136 >1k 0.016922566550709596 4.525366957954791 >5k 0.0013017358885161225 1.5120896381374687 >10k+ 0.001952603832774184 9.537687971016414 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 56111 6.546679407437484 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 13639 1.591312941099603 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 11612 1.3548152996589629 No Hit GCATACGGGATTTGCTGAAGGTAATCCAATAAGATCTTTTTTTAAA 6737 0.7860308882020696 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6162 0.718943496081513 No Hit CTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTT 4288 0.5002969346312118 No Hit GACATAGGGATCCTCAATTATAGCACTTGGTTTTCTTTCTATATTT 1917 0.22366353164366445 No Hit AATCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGT 1895 0.22109670968426923 No Hit GGGATGGGGATTTTTTTCTAAGGTGAAGAAAATGTTCAAAATTTAA 1843 0.21502967596206238 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCGAGAACTTCGT 1836 0.21421295988407302 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTAT 1808 0.21094609557211547 No Hit GGCGAAGGGGAGCATTTTTTAAAATATGAACTTCTAAAATTAAATT 1688 0.19694524852086884 No Hit CGACCCGGGATTTTCAGTATTTCTTTGAATAAAGCTTAATGTTTCT 1560 0.1820110116662058 No Hit ATGTTAGGGTCCTAATATTGTGAACTGGTGAAAGAGGGAATGATGC 1526 0.17804410500168594 No Hit ATGTAAGGGGAACTTCAATTATGATTTTTATCCAGACAATTTCTAT 1453 0.16952692304551092 No Hit TATTAAGGGATGTTTCATATGATCAAGCTGTATTTTTAAATTCAAA 1413 0.16485997402842872 No Hit ATGTAAGGGATATTTTGAGGTGAAACTTAGTGAATTTTTTTCTGAT 1394 0.1626431732453147 No Hit AAGCTGGGAACTTGGGGAGTTTTTAGCTTTTAAAAGTTGCATCTAT 1361 0.15879294030622187 No Hit AAACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGT 1285 0.1499257371737657 No Hit ATCTATGGGAATCTCATTCCTTTTGATTGTTAATGTTTTTGTTCAG 1259 0.14689222031266225 No Hit TCTAAAGGGAACTAACTCAGGTTCCCCTCATTAAATTATACTTTCA 1205 0.14059183913960127 No Hit AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1179 0.13755832227849785 No Hit GGAGAAGGGGAAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAAG 1156 0.13487482659367558 No Hit GAATCTGGGTATTTGTTTTTCTTCTTGACAAGATTTTCATTTAATT 1104 0.12880779287146873 No Hit ATTAAAGGGGTTCTTGTAACCTTTACTTCATGAAGGACTACTTTTT 1087 0.1268243395392088 No Hit CTATAGCGGGGTTAATGTGTTCAAGGTAATAAGTTCTCTAACATTT 1072 0.12507423365780296 No Hit ACACAAGATAGGAAAATGTACATTACTTCTAGTTTTAGACTTTAGA 1071 0.12495755993237592 No Hit TGTATTGGGATTTGTAAAACAAAGTCTACTCTAAAATTATTATTTG 1069 0.1247242124815218 No Hit GCTTTGGGGTCAATATTTTCACAACCTCAATCTTATTAATCTTCAT 1068 0.12460753875609475 No Hit CCTAATGGGGATTATATTACTAATTTTCTTTACCCACATTTGAAAT 1054 0.12297410660011597 No Hit ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1013 0.11819048385760672 No Hit ATATCTGGGAAGATTTCTCATAACCATCTAAAGTCAAAACTGTTGC 990 0.11550698817278444 No Hit TCGCATGGGTAGTTCATAAAAGCAAAAGTTATACATTAGGGTTATT 984 0.11480694582022212 No Hit CAATCCGGGAATATTTAACCATCTACCTCTGTTTTTAATTTTCTTT 984 0.11480694582022212 No Hit CTTCAAGGGAGGTAATTCATATTTTGTTGTAAATCTATAGCAGTTT 978 0.1141069034676598 No Hit CTTTAAGGGGTTTATATAAATAATGTTGCTAATTTCCTTCTTATAT 965 0.11259014503710808 No Hit GCCATGGGGGAATTATACAAACACACTACAGACTGATTTTTTTTTA 934 0.10897325954886937 No Hit AAACTAGGGATTTTCAATTGAGTTTAAGTGTCTAGAACTAAAGTAG 928 0.10827321719630704 No Hit GCTTCAGGGTGGGATTACTTGAAAAAAATCTGTATTGCAATTAAGG 926 0.10803986974545292 No Hit ACACCTGGGAATCTTGTCTATGGCTTTGTAATATTCAGCAAGGTAT 922 0.1075731748437447 No Hit GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 921 0.10745650111831766 No Hit GGTATTGGGATAAACTTCAACATTAATATATCTGCATAAAATGGAG 920 0.1073398273928906 No Hit CTTCCCGGGAGAGGACTTTTGGTTTTTGTTTTGTTTTTTGGTGTTA 913 0.1065231113149012 No Hit AGCCAAGGGCAATGTACCTATATATGCATAATTTTTGTTGGGTGCT 913 0.1065231113149012 No Hit TCCGGGGGGGAAATTACAAAAGAGGTTTGTCTCCCTCATCAAAAAC 903 0.10535637406063067 No Hit GCAGTATGGGATTTCTAAAAATAATGTTAAGAATTTTTGCTGGTTT 891 0.10395628935550599 No Hit GCGTGGGAGATATTTATATTTTTATTTTATTTTTTTCTACCCTGAG 885 0.10325624700294367 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.50021176281165E-4 0.0 0.0 0.5691344326331743 0.0 2 3.50021176281165E-4 0.0 0.0 0.7433283046957674 0.0 3 3.50021176281165E-4 0.0 0.0 1.0057275131812142 0.0 4 3.50021176281165E-4 0.0 0.0 2.21026705449013 0.0 5 3.50021176281165E-4 0.0 0.0 2.3636930034267074 0.0 6 3.50021176281165E-4 0.0 0.0 3.1721252469107712 0.0 7 3.50021176281165E-4 0.0 0.0 3.7720615430566884 0.0 8 3.50021176281165E-4 0.0 0.0 4.1195158973784585 0.0 9 3.50021176281165E-4 0.0 0.0 4.905663459305955 0.0 10 3.50021176281165E-4 0.0 0.0 5.776982840795202 0.0 11 3.50021176281165E-4 0.0 0.0 6.942553357811481 0.0 12 3.50021176281165E-4 0.0 0.0 7.3975808869769955 0.0 13 3.50021176281165E-4 0.0 0.0 7.579475224917775 0.0 14 3.50021176281165E-4 0.0 0.0 7.781787464808287 0.0 15 3.50021176281165E-4 0.0 0.0 7.937896909429687 0.0 16 3.50021176281165E-4 0.0 0.0 8.283484484144624 0.0 17 3.50021176281165E-4 0.0 0.0 8.68215860392887 0.0 18 3.50021176281165E-4 0.0 0.0 9.236358799707382 0.0 19 3.50021176281165E-4 0.0 0.0 9.49117421604007 0.0 20 3.50021176281165E-4 0.0 0.0 9.711104188470069 0.0 21 3.50021176281165E-4 0.0 0.0 10.021339624380609 0.0 22 3.50021176281165E-4 0.0 0.0 10.345575907342393 0.0 23 3.50021176281165E-4 0.0 0.0 10.68089619421975 0.0 24 3.50021176281165E-4 0.0 0.0 10.914360318799288 0.0 25 3.50021176281165E-4 0.0 0.0 11.123556308489997 0.0 26 3.50021176281165E-4 0.0 0.0 11.325985222105938 0.0 27 3.50021176281165E-4 0.0 0.0 11.532381042386397 0.0 28 3.50021176281165E-4 0.0 0.0 11.746127307368763 0.0 29 3.50021176281165E-4 0.0 0.0 11.971890966070115 0.0 30 3.50021176281165E-4 0.0 0.0 12.233823479653852 0.0 31 3.50021176281165E-4 0.0 0.0 12.472304574426753 0.0 32 3.50021176281165E-4 0.0 0.0 12.686167513134544 0.0 33 3.50021176281165E-4 0.0 0.0 12.898630367137212 0.0 34 3.50021176281165E-4 0.0 0.0 13.110159831336462 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCGAG 30 4.866062E-6 40.000004 1 TTAGGTA 30 4.866062E-6 40.000004 17 CGGGTCC 20 0.0012555898 40.000004 6 GAGTGCG 80 0.0 40.000004 9 CTACTAC 20 0.0012555898 40.000004 24 GGTCGAT 20 0.0012555898 40.000004 8 CCTAGTA 20 0.0012555898 40.000004 28 CGAAACG 30 4.866062E-6 40.000004 1 GCGAATT 20 0.0012555898 40.000004 19 CGGCCTA 20 0.0012555898 40.000004 14 TCATTCG 20 0.0012555898 40.000004 1 CTATCCG 20 0.0012555898 40.000004 1 GGGTCGA 20 0.0012555898 40.000004 7 CCGGCAC 20 0.0012555898 40.000004 33 GTCCTGA 20 0.0012555898 40.000004 16 ATCAGTC 20 0.0012555898 40.000004 16 TAGGTAT 30 4.866062E-6 40.000004 18 TGGCGCG 20 0.0012555898 40.000004 1 GGCCGAT 40 1.9274012E-8 40.000004 8 CACGATT 20 0.0012555898 40.000004 36 >>END_MODULE