SRR3548326_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548326_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4512881
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	16770	0.3716029737987773	No Hit
CCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	11686	0.25894766558214144	No Hit
CTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGCT	8279	0.18345265474538328	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	5542	0.12280403582545164	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4770	0.10569744693024258	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACGC	20	7.0354826E-4	45.000004	29
CCGTCTA	20	7.0354826E-4	45.000004	40
CGATCTA	40	6.8230293E-9	45.000004	18
ATGTTCG	20	7.0354826E-4	45.000004	22
GTGCGTA	30	2.1669202E-6	45.000004	1
TACGTAG	40	6.8230293E-9	45.000004	1
TCGTTAA	50	2.1827873E-11	45.0	36
TAACGGA	55	1.8189894E-12	45.0	11
ACGATAG	95	0.0	45.0	1
CCGTAAC	45	3.8562575E-10	45.0	28
ACGGTAC	35	1.2129931E-7	45.0	13
ACCGTAA	65	0.0	44.999996	38
TATCCGT	80	0.0	42.187504	35
CGGTAAT	120	0.0	41.250004	6
GACGTAG	170	0.0	41.02941	1
CCCGTAC	110	0.0	40.909092	22
CGTAGAT	55	6.184564E-11	40.909092	31
AAGTACG	150	0.0	40.500004	1
AACCGTA	50	1.0822987E-9	40.5	36
TAGTCCG	50	1.0822987E-9	40.5	38