SRR3548320_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548320_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2632957
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	13581	0.5158078920392547	No Hit
CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	13260	0.5036162763007523	No Hit
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	8583	0.3259832955874327	No Hit
TCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	4794	0.18207665373950277	No Hit
ACTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	3790	0.1439446219592648	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2864	0.10877503886314892	No Hit
ACCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTG	2843	0.10797745652511605	No Hit
GCCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTG	2785	0.10577461006769195	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTA	25	3.8921826E-5	45.0	25
CGAACGC	45	3.8562575E-10	45.0	20
ACACGAA	35	1.2127202E-7	45.0	19
CGTATTA	35	1.2127202E-7	45.0	37
CACGGAT	35	1.2127202E-7	45.0	40
ACGTTAC	45	3.8562575E-10	45.0	38
CTATCGA	20	7.0349476E-4	45.0	37
ATTACGA	45	3.8562575E-10	45.0	14
TTGTCGT	45	3.8562575E-10	45.0	40
TAACGAT	45	3.8562575E-10	45.0	12
TCGATAT	55	1.8189894E-12	45.0	37
ATCCGAT	35	1.2127202E-7	45.0	9
TCAATCG	25	3.8921826E-5	45.0	35
CCGTACT	45	3.8562575E-10	45.0	39
GCCGAAT	25	3.8921826E-5	45.0	19
CTACGGT	25	3.8921826E-5	45.0	45
CGTAGCA	20	7.0349476E-4	45.0	32
TGCGAAC	25	3.8921826E-5	45.0	35
GTCACGA	25	3.8921826E-5	45.0	21
CCGAGTA	50	2.1827873E-11	45.0	22