SRR3548303_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548303_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	560922
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGC	13032	2.323317680533122	No Hit
GAATCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTC	8446	1.5057352002595727	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCG	8396	1.4968213049229662	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4291	0.7649904977875712	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTC	1906	0.33979769023144035	No Hit
GAACTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCT	1849	0.32963584954770897	No Hit
GATTGATACGGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGC	1827	0.32571373559960204	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCT	1672	0.2980806600561219	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACAGTTCGTCGTA	1627	0.290058154253176	No Hit
GCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC	1596	0.28453153914448	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACAGTTCGT	1370	0.24424073222301854	No Hit
GATTCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTC	1348	0.24031861827491166	No Hit
GATTGATACCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCG	1281	0.22837399852385895	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACAGTTCGTCGT	621	0.11071058008065293	No Hit
GTATGATACGGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGC	597	0.10643191031908181	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	568	0.10126185102385002	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAC	30	2.163506E-6	45.000004	21
ACCGGTC	30	2.163506E-6	45.000004	17
CGGTTAT	60	0.0	45.000004	31
GAGTAAG	60	0.0	45.000004	1
AGACGTG	30	2.163506E-6	45.000004	24
TACGACG	65	0.0	45.000004	1
AGACACG	30	2.163506E-6	45.000004	24
TCCCGCA	30	2.163506E-6	45.000004	31
GCGTATG	30	2.163506E-6	45.000004	1
CTTGTTC	20	7.030195E-4	45.0	20
TTTAGTG	20	7.030195E-4	45.0	1
TGTCACG	20	7.030195E-4	45.0	1
AAGTACG	20	7.030195E-4	45.0	11
TCCATTG	25	3.8882426E-5	45.0	1
GTACCGG	25	3.8882426E-5	45.0	2
CGAAAAG	25	3.8882426E-5	45.0	44
ACGTTAG	35	1.2104465E-7	45.0	1
GCGAACG	20	7.030195E-4	45.0	10
GCGCGAC	35	1.2104465E-7	45.0	9
ATAATGC	35	1.2104465E-7	45.0	40