##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548303_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 560922 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.932896195906025 28.0 25.0 31.0 16.0 33.0 2 26.618914929348467 30.0 25.0 31.0 16.0 33.0 3 24.633856400711686 28.0 16.0 31.0 10.0 33.0 4 30.47245962896802 33.0 28.0 35.0 19.0 37.0 5 32.25349157280335 35.0 32.0 35.0 28.0 37.0 6 32.077538409975006 35.0 32.0 35.0 25.0 37.0 7 33.11419234759913 35.0 32.0 35.0 28.0 37.0 8 33.35180649002891 35.0 33.0 36.0 28.0 37.0 9 35.224319958924774 37.0 35.0 39.0 30.0 39.0 10 35.636518089859194 37.0 35.0 39.0 30.0 39.0 11 35.684845664816145 37.0 35.0 39.0 30.0 39.0 12 34.62415629980639 35.0 33.0 39.0 27.0 39.0 13 34.33800599726878 37.0 33.0 39.0 26.0 39.0 14 35.34073186646272 37.0 33.0 40.0 27.0 41.0 15 35.94138578982461 38.0 34.0 40.0 30.0 41.0 16 35.74648346828971 37.0 34.0 40.0 30.0 41.0 17 35.548445238375386 37.0 34.0 40.0 30.0 41.0 18 35.467635428811846 37.0 34.0 39.0 29.0 40.0 19 34.768702243805734 36.0 33.0 39.0 27.0 40.0 20 34.70410146152228 35.0 33.0 39.0 28.0 40.0 21 35.11799679812879 35.0 34.0 39.0 30.0 40.0 22 35.34397117602804 36.0 34.0 39.0 30.0 40.0 23 35.509252623359394 36.0 34.0 40.0 30.0 41.0 24 35.42995817600308 36.0 34.0 40.0 30.0 41.0 25 34.731643615333326 35.0 33.0 39.0 27.0 40.0 26 34.69041150106432 35.0 33.0 39.0 27.0 40.0 27 34.97167698895747 35.0 34.0 39.0 29.0 41.0 28 34.85712451998673 36.0 34.0 40.0 27.0 41.0 29 34.770764919186625 36.0 34.0 40.0 27.0 41.0 30 34.421201165224396 36.0 33.0 40.0 25.0 41.0 31 34.21399588534591 35.0 33.0 39.0 24.0 41.0 32 33.7203907138604 35.0 33.0 40.0 22.0 41.0 33 33.40928150438029 35.0 33.0 40.0 20.0 41.0 34 33.216755627342124 35.0 33.0 40.0 17.0 41.0 35 32.97985103098114 35.0 33.0 40.0 15.0 41.0 36 32.62968291491509 35.0 32.0 40.0 12.0 41.0 37 32.63746652832301 35.0 32.0 40.0 12.0 41.0 38 32.41320183554933 35.0 31.0 40.0 10.0 41.0 39 32.358714758914786 35.0 31.0 40.0 10.0 41.0 40 32.15444036782298 35.0 31.0 40.0 10.0 41.0 41 32.02937663347132 35.0 31.0 39.0 10.0 41.0 42 32.10922730789664 35.0 31.0 39.0 10.0 41.0 43 32.08637208025358 35.0 31.0 40.0 10.0 41.0 44 32.016863307197795 35.0 31.0 39.0 10.0 40.0 45 31.95721151960522 35.0 31.0 39.0 10.0 40.0 46 31.796615215662783 35.0 31.0 39.0 10.0 40.0 47 31.78391113202905 35.0 31.0 39.0 10.0 40.0 48 31.722998919635884 35.0 31.0 39.0 10.0 40.0 49 31.710893849768773 35.0 31.0 39.0 10.0 40.0 50 31.551796863021952 35.0 30.0 39.0 10.0 40.0 51 29.916277129440456 34.0 26.0 37.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 39.0 9 66.0 10 85.0 11 64.0 12 54.0 13 50.0 14 81.0 15 150.0 16 339.0 17 656.0 18 1368.0 19 2284.0 20 3495.0 21 5181.0 22 7078.0 23 9339.0 24 12353.0 25 15460.0 26 17596.0 27 17405.0 28 16721.0 29 17764.0 30 21068.0 31 26805.0 32 36252.0 33 49101.0 34 63872.0 35 51974.0 36 52907.0 37 59194.0 38 54666.0 39 17452.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.53888775979548 19.792948039121303 23.04972883930386 23.618435361779355 2 33.844099536120886 28.086079704486544 26.33699516153761 11.73282559785496 3 25.136650015510178 23.05079850674425 38.21600864291292 13.59654283483265 4 21.46893864031006 22.297396072894273 43.67380847961036 12.559856807185312 5 26.107016661853162 25.60605574393588 34.89094740445196 13.395980189759005 6 17.393149136600098 40.079904157797344 33.46169342618047 9.065253279422095 7 69.36971628853922 3.743122929747808 25.12452711785239 1.7626336638605724 8 68.57210093381968 10.44316322055473 18.224637293598754 2.7600985520268417 9 65.65119570992046 4.127846652475745 18.201282887816845 12.019674749786958 10 45.060454038172864 21.338795768395606 23.851622863784982 9.749127329646546 11 40.08115210314447 16.09029419420169 31.139267135181004 12.689286567472841 12 33.855687600058474 16.28871750439455 33.02259494189923 16.832999953647747 13 19.564039206877247 31.06759941667469 36.72863606704676 12.639725309401307 14 14.865881530765417 36.13069196786719 32.45157080663621 16.551855694731174 15 10.997429232584922 19.43621394775031 55.304837392721275 14.261519426943497 16 13.025875255383102 18.112322212357512 46.5775990244633 22.284203507796093 17 13.515961220989729 19.073240129643693 38.40088283219414 29.009915817172445 18 16.38160029380199 22.153525802161443 40.84828193581282 20.616591968223748 19 21.248408869682418 22.180445766077995 34.53456986889443 22.036575495345165 20 24.43548300833271 20.4753958660919 39.05462791618086 16.034493209394533 21 18.070783460088926 27.93953526515273 36.24086771422765 17.7488135605307 22 18.534662573405928 19.854988750664084 37.07485176192055 24.535496914009432 23 17.068148512627424 28.516799127151373 33.97442068594208 20.440631674279132 24 17.794274426747393 21.31169752657232 41.546418218575845 19.347609828104442 25 13.896584551862826 28.670831238567928 38.759577980539184 18.67300622903006 26 14.016030749373353 27.788355600243886 35.7589825323307 22.436631118052063 27 16.62601930393174 30.939061045920823 34.39462171210971 18.04029793803773 28 12.423474208535232 27.225175692877084 44.83101037220861 15.520339726379067 29 15.80148398529564 23.28059872852197 38.86547505713807 22.052442229044324 30 14.035997874927354 28.413041385433267 38.18694934411558 19.364011395523796 31 24.526226462859363 25.43811795579421 30.950114276138212 19.085541305208213 32 27.070608747740327 25.87347260403407 31.669822185615825 15.386096462609775 33 22.204513283486833 24.109769272733107 31.66090829027922 22.024809153500843 34 20.152891132813476 26.91265452237566 33.20140768235156 19.73304666245931 35 18.996224073935412 23.08627581018395 31.767518478505032 26.149981637375607 36 26.38477364054182 27.77551959095917 29.103333440300077 16.73637332819893 37 19.50110710580081 26.488887938073386 34.64688495013567 19.363120005990137 38 18.644660041859655 30.800539112389956 28.394143927319664 22.16065691843073 39 23.753213459268846 26.614752140226273 31.98056057704993 17.651473823454957 40 19.813984832115693 24.221727798160885 32.21053907673438 23.753748292989044 41 17.462320964412164 25.120961559717752 32.400226769497365 25.016490706372725 42 19.40073664431062 24.71823176840987 30.29262535611012 25.588406231169397 43 25.293891129247914 24.963007334353083 27.24549937424455 22.497602162154454 44 18.57085298847255 27.795843272326632 31.27261900941664 22.36068472978418 45 16.634754921361615 31.586744681078656 27.736298451478103 24.04220194608163 46 26.47997404273678 28.92469897775448 27.38206025080136 17.213266728707378 47 18.746813282417165 25.052502843532615 36.065977087723425 20.1347067863268 48 22.074548689479105 24.955876218083798 30.77486709382053 22.194707998616565 49 19.577944883602356 21.84278741072734 35.62616549181526 22.953102213855043 50 21.071557186204142 26.858814594542558 31.114129950331776 20.955498268921527 51 18.533236350152073 27.057594460548884 26.84169991549627 27.567469273802775 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 21.0 1 252.5 2 484.0 3 5607.5 4 10731.0 5 10000.0 6 9269.0 7 9167.0 8 9065.0 9 9135.0 10 9205.0 11 8866.0 12 8527.0 13 8100.5 14 7674.0 15 7123.5 16 6573.0 17 6054.0 18 5535.0 19 5088.5 20 4642.0 21 4267.5 22 3893.0 23 3873.5 24 3854.0 25 4197.5 26 4985.5 27 5430.0 28 5877.0 29 6324.0 30 7276.5 31 8229.0 32 9225.0 33 10221.0 34 11667.0 35 13113.0 36 14087.0 37 15061.0 38 16940.5 39 18820.0 40 24539.0 41 30258.0 42 35598.5 43 40939.0 44 41979.5 45 43020.0 46 64369.0 47 85718.0 48 63470.5 49 41223.0 50 37534.5 51 33846.0 52 29993.0 53 26140.0 54 24298.0 55 22456.0 56 20059.0 57 17662.0 58 16515.0 59 15368.0 60 15139.5 61 14911.0 62 12341.0 63 9771.0 64 8341.5 65 6912.0 66 5572.0 67 4232.0 68 3431.5 69 2631.0 70 2125.0 71 1619.0 72 1374.5 73 1130.0 74 899.5 75 618.0 76 567.0 77 449.5 78 332.0 79 236.5 80 141.0 81 97.5 82 54.0 83 46.0 84 38.0 85 27.5 86 17.0 87 16.0 88 15.0 89 15.5 90 16.0 91 20.0 92 24.0 93 12.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 560922.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.232026815181584 #Duplication Level Percentage of deduplicated Percentage of total 1 83.24969682372121 26.83306460377918 2 6.820965238944149 4.397070689741384 3 2.3859662431443205 2.3071358378743736 4 1.143640586808118 1.4744741624371702 5 0.6934507613297685 1.117566176709459 6 0.49327561245330953 0.9539563660722113 7 0.37120551468392143 0.8375294272264805 8 0.2863137796543321 0.7382778738699538 9 0.2349229248795877 0.6814837812797783 >10 3.326132813314357 26.366692193873604 >50 0.8440959836603812 18.770624239745906 >100 0.13975467803348 6.187601179229381 >500 0.0033407492757007167 0.6051566557329737 >1k 0.005567915459501195 3.368023415818718 >5k 0.001113583091900239 3.0225529050577533 >10k+ 5.567915459501195E-4 2.3387904915516353 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGC 13032 2.323317680533122 No Hit GAATCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTC 8446 1.5057352002595727 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCG 8396 1.4968213049229662 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4291 0.7649904977875712 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTC 1906 0.33979769023144035 No Hit GAACTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCT 1849 0.32963584954770897 No Hit GATTGATACGGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGC 1827 0.32571373559960204 No Hit GAATGACTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCT 1672 0.2980806600561219 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACAGTTCGTCGTA 1627 0.290058154253176 No Hit GCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTCTGC 1596 0.28453153914448 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACAGTTCGT 1370 0.24424073222301854 No Hit GATTCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCGTCTTC 1348 0.24031861827491166 No Hit GATTGATACCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGCCG 1281 0.22837399852385895 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACAGTTCGTCGT 621 0.11071058008065293 No Hit GTATGATACGGCTGTCTCTTATACACATCTGACGCACAGTTCGTCGTATGC 597 0.10643191031908181 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 568 0.10126185102385002 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10037046149018937 0.0 2 0.0 0.0 0.0 0.5494525085484256 0.0 3 0.0 0.0 0.0 0.6303906782048128 0.0 4 0.0 0.0 0.0 1.1853698018619345 0.0 5 0.0 0.0 0.0 3.4537778871215608 0.0 6 0.0 0.0 0.0 3.673237990308813 0.0 7 0.0 0.0 0.0 4.169028848930868 0.0 8 0.0 0.0 0.0 4.819921486409875 0.0 9 0.0 0.0 0.0 4.936871793226152 0.0 10 0.0 0.0 0.0 7.062122719379878 0.0 11 0.0 0.0 0.0 7.273203760950721 0.0 12 0.0 0.0 0.0 10.49504209141378 0.0 13 0.0 0.0 0.0 10.8180816584124 0.0 14 0.0 0.0 0.0 11.006877961641726 0.0 15 0.0 0.0 0.0 11.486267252844424 0.0 16 0.0 0.0 0.0 11.769729124548512 0.0 17 0.0 0.0 0.0 11.929644406887233 0.0 18 1.782779067321303E-4 0.0 0.0 12.145538951939843 0.0 19 1.782779067321303E-4 0.0 0.0 12.593729609464418 0.0 20 1.782779067321303E-4 0.0 0.0 12.725476982539462 0.0 21 1.782779067321303E-4 0.0 0.0 12.80980243242376 0.0 22 1.782779067321303E-4 0.0 0.0 12.93620146829684 0.0 23 1.782779067321303E-4 0.0 0.0 13.021061751901334 0.0 24 1.782779067321303E-4 0.0 0.0 13.086133187858561 0.0 25 1.782779067321303E-4 0.0 0.0 13.138546892437807 0.0 26 1.782779067321303E-4 0.0 0.0 13.208788387690268 0.0 27 1.782779067321303E-4 0.0 0.0 13.290261391066851 0.0 28 1.782779067321303E-4 0.0 0.0 13.343923040993221 0.0 29 1.782779067321303E-4 0.0 0.0 13.404715807188879 0.0 30 1.782779067321303E-4 0.0 0.0 13.482801530337552 0.0 31 1.782779067321303E-4 0.0 0.0 13.547338132574582 0.0 32 1.782779067321303E-4 0.0 0.0 13.604565340635597 0.0 33 1.782779067321303E-4 0.0 0.0 13.670706444033216 0.0 34 1.782779067321303E-4 0.0 0.0 13.744335219513587 0.0 35 1.782779067321303E-4 0.0 0.0 13.824381999636312 0.0 36 1.782779067321303E-4 0.0 0.0 13.896762829769559 0.0 37 1.782779067321303E-4 0.0 0.0 13.965756379674893 0.0 38 1.782779067321303E-4 0.0 0.0 14.03171920516578 0.0 39 1.782779067321303E-4 0.0 0.0 14.105526258552883 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAGAC 30 2.163506E-6 45.000004 21 ACCGGTC 30 2.163506E-6 45.000004 17 CGGTTAT 60 0.0 45.000004 31 GAGTAAG 60 0.0 45.000004 1 AGACGTG 30 2.163506E-6 45.000004 24 TACGACG 65 0.0 45.000004 1 AGACACG 30 2.163506E-6 45.000004 24 TCCCGCA 30 2.163506E-6 45.000004 31 GCGTATG 30 2.163506E-6 45.000004 1 CTTGTTC 20 7.030195E-4 45.0 20 TTTAGTG 20 7.030195E-4 45.0 1 TGTCACG 20 7.030195E-4 45.0 1 AAGTACG 20 7.030195E-4 45.0 11 TCCATTG 25 3.8882426E-5 45.0 1 GTACCGG 25 3.8882426E-5 45.0 2 CGAAAAG 25 3.8882426E-5 45.0 44 ACGTTAG 35 1.2104465E-7 45.0 1 GCGAACG 20 7.030195E-4 45.0 10 GCGCGAC 35 1.2104465E-7 45.0 9 ATAATGC 35 1.2104465E-7 45.0 40 >>END_MODULE