SRR3548302_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548302_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	702523
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGC	13017	1.852893072539974	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCG	11016	1.5680625403011719	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC	8806	1.2534820924012453	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4178	0.5947136250343406	No Hit
GAACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCT	2195	0.31244528648884096	No Hit
GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	2035	0.28967023143726256	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTC	1956	0.27842504800554574	No Hit
GATTGATACGGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGC	1896	0.2698844023612038	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCT	1785	0.2540842079191713	No Hit
GATTGATACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCG	1630	0.2320208733379548	No Hit
GATTCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC	1558	0.2217720985647445	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTA	1545	0.21992162534180373	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGGTTTGTT	1379	0.19629250572579118	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1357	0.19316093565619916	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	935	0.13309172795766117	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	30	2.1642918E-6	45.000004	6
CTGTCGA	20	7.031411E-4	45.000004	13
ATCTCGC	20	7.031411E-4	45.000004	38
GTCGCCC	20	7.031411E-4	45.000004	13
GGGTCTA	40	6.8084773E-9	45.000004	7
CGGCCTA	20	7.031411E-4	45.000004	45
CCGGCAC	20	7.031411E-4	45.000004	36
ATGTGGA	30	2.1642918E-6	45.000004	12
GCTGCGT	30	2.1642918E-6	45.000004	38
CGTCTAG	20	7.031411E-4	45.000004	30
GATCAAT	25	3.8892507E-5	45.000004	27
GAATACC	20	7.031411E-4	45.000004	27
CGACAAA	20	7.031411E-4	45.000004	43
TATGCGT	30	2.1642918E-6	45.000004	20
CGTTCGG	30	2.1642918E-6	45.000004	31
CGTTCCC	25	3.8892507E-5	45.000004	18
CTTGGTA	25	3.8892507E-5	45.000004	40
CATTAGT	25	3.8892507E-5	45.000004	25
ATGTAGT	20	7.031411E-4	45.000004	39
ATGTACT	20	7.031411E-4	45.000004	20