##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548302_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 702523 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.85646590930119 28.0 25.0 31.0 16.0 33.0 2 26.55765576358354 30.0 25.0 31.0 16.0 33.0 3 24.6929879875819 28.0 16.0 31.0 10.0 33.0 4 30.528591946455844 33.0 28.0 35.0 19.0 37.0 5 32.21997429265661 35.0 32.0 35.0 26.0 37.0 6 31.986064513190314 35.0 32.0 35.0 25.0 37.0 7 32.92432133894549 35.0 32.0 35.0 28.0 37.0 8 33.22436703139968 35.0 33.0 36.0 28.0 37.0 9 35.092654617713585 37.0 35.0 39.0 29.0 39.0 10 35.49311410444925 37.0 35.0 39.0 30.0 39.0 11 35.57285526594859 37.0 35.0 39.0 30.0 39.0 12 34.35718830557861 35.0 33.0 39.0 27.0 39.0 13 33.95251828054028 35.0 33.0 39.0 25.0 39.0 14 34.86177249712821 37.0 33.0 40.0 25.0 41.0 15 35.59987786876729 37.0 33.0 40.0 30.0 41.0 16 35.40649914664716 36.0 34.0 40.0 30.0 41.0 17 35.28390387218639 36.0 34.0 39.0 29.0 41.0 18 35.14745709393144 36.0 34.0 39.0 29.0 40.0 19 34.47093404771089 36.0 33.0 39.0 27.0 40.0 20 34.50798763883887 35.0 33.0 39.0 27.0 40.0 21 34.86425070780601 35.0 34.0 39.0 29.0 40.0 22 35.083301187292086 35.0 33.0 39.0 29.0 40.0 23 35.30834150625673 35.0 34.0 39.0 30.0 41.0 24 35.17703192635686 35.0 34.0 39.0 30.0 41.0 25 34.545624840752545 35.0 33.0 39.0 27.0 40.0 26 34.470975327498174 35.0 33.0 39.0 27.0 40.0 27 34.7217130257657 35.0 33.0 39.0 27.0 40.0 28 34.582964543509604 35.0 33.0 39.0 27.0 41.0 29 34.596668009445956 35.0 33.0 39.0 27.0 41.0 30 34.25979362953241 35.0 33.0 39.0 25.0 41.0 31 34.09888217182925 35.0 33.0 39.0 24.0 40.0 32 33.55551206152681 35.0 33.0 39.0 23.0 40.0 33 33.38388494042188 35.0 33.0 39.0 21.0 41.0 34 33.31024464679448 35.0 33.0 40.0 18.0 41.0 35 33.07357339190318 35.0 33.0 40.0 17.0 41.0 36 32.83032583986574 35.0 33.0 40.0 15.0 41.0 37 32.61096077993176 35.0 32.0 39.0 15.0 41.0 38 32.560418662449486 35.0 32.0 39.0 15.0 41.0 39 32.35606521067638 35.0 31.0 39.0 15.0 40.0 40 32.2386356033895 35.0 31.0 39.0 14.0 40.0 41 32.18759101125515 35.0 31.0 39.0 13.0 40.0 42 32.21226778340353 35.0 31.0 39.0 12.0 40.0 43 32.175394969275025 35.0 31.0 39.0 12.0 40.0 44 32.15453444228872 35.0 31.0 39.0 12.0 40.0 45 32.07046886721147 35.0 31.0 39.0 12.0 40.0 46 31.94734264927981 35.0 31.0 39.0 11.0 40.0 47 31.990975384435814 35.0 31.0 39.0 12.0 40.0 48 31.89304976491873 35.0 31.0 38.0 11.0 40.0 49 31.898508660926403 35.0 31.0 38.0 10.0 40.0 50 31.69916002750088 35.0 31.0 38.0 10.0 40.0 51 30.02574862317675 34.0 27.0 37.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 5.0 8 42.0 9 74.0 10 110.0 11 81.0 12 71.0 13 91.0 14 128.0 15 233.0 16 452.0 17 928.0 18 1767.0 19 2887.0 20 4362.0 21 6091.0 22 8291.0 23 10937.0 24 14441.0 25 18079.0 26 21040.0 27 21045.0 28 20983.0 29 23435.0 30 28495.0 31 37139.0 32 49570.0 33 67228.0 34 87218.0 35 66401.0 36 62995.0 37 68296.0 38 60748.0 39 18860.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.00287250381838 20.165460774949718 23.603497679079545 22.228169042152356 2 32.54057162541298 27.48408237168036 28.24918187731932 11.726164125587347 3 26.13764958584986 22.372505953541737 37.30966815321349 14.180176307394918 4 22.24767018304027 22.515846456272605 41.70980878917843 13.52667457150869 5 26.318853617603978 26.440273129847707 32.78597284359373 14.454900408954583 6 18.691772369018523 39.79271853021182 31.91311885874199 9.602390242027663 7 72.04290820371718 4.009263753642229 21.9935859751211 1.9542420675194974 8 71.26215084773025 10.135041842046451 15.782686118461603 2.820121191761693 9 68.38523436243369 4.098655844719675 16.03648563819263 11.479624154654012 10 49.82356449539731 17.6910933876898 21.20400328530169 11.281338831611206 11 45.13418066027731 16.360887828583547 25.95416804859058 12.550763462548556 12 38.17540493336161 17.320856399007578 28.98310802635643 15.520630641274376 13 20.475913244121543 34.152903178970654 32.81415697422006 12.55702660268774 14 15.663117079440816 38.13825312480873 30.463344260614956 15.735285535135505 15 12.265790586215683 19.603201603363875 54.00691507609003 14.124092734330407 16 13.591156446123472 17.715149539588026 46.19322072017571 22.50047329411279 17 14.128078368964433 18.397404782476872 35.858043081863514 31.616473766695186 18 18.518112574250235 20.822094080905536 38.77325012846555 21.88654321637868 19 23.738866912542363 22.026040428569598 31.54103139683683 22.694061262051207 20 26.818196699609835 20.14880651594325 36.1125543220649 16.920442462382017 21 21.099522720252576 27.886489125622933 33.262825558736154 17.751162595388337 22 21.233183824586526 20.062545994935395 33.893267551382664 24.81100262909542 23 19.41032535589582 28.939977765852504 30.073606131044823 21.57609074720685 24 19.416161463752786 20.942801872678903 39.59272507804015 20.04831158552816 25 14.803643439431877 27.539881256556725 37.96843662058039 19.688038683431007 26 15.294445875793391 27.835956972227244 33.34894373564994 23.52065341632943 27 18.887353154273953 30.18733906220864 31.943153462591262 18.98215432092615 28 14.009790426790298 25.83758823554531 43.893509536342584 16.259111801321808 29 16.68856393313813 21.001874671718934 39.65749164084308 22.65206975429986 30 18.27513120566871 28.347683990417394 35.697905976032104 17.67927882788179 31 27.956807108094683 23.704989018153142 27.41447610967897 20.923727764073206 32 28.529742086735947 25.198178564972253 30.293670100480696 15.978409247811104 33 24.22312152057655 23.88220741527324 29.444872267527185 22.44979879662303 34 20.460113049679514 24.04006701559949 32.713804387899046 22.786015546821954 35 22.91028194094713 22.29507076636637 31.925787483114433 22.86885980957207 36 28.4027711548234 20.976679767068124 29.06837213870578 21.552176939402695 37 22.152584328199932 25.13668591633299 34.900352016944645 17.81037773852244 38 23.20166030151326 27.577175409203686 27.164946912770116 22.05621737651294 39 20.13599554747674 26.73293258726049 33.5628869090407 19.568184956222073 40 23.097891456934505 22.936330910162372 30.539783039131812 23.425994593771307 41 17.16797884197386 22.90857381181826 32.64818376053169 27.275263585676196 42 22.82530251678593 23.26372232652881 29.94179549993381 23.969179656751454 43 21.99671754519069 24.2568570708717 29.567145844335347 24.179279539602263 44 20.78565399282301 27.489918479537323 30.599709902736283 21.124717624903383 45 17.65693080511243 31.682948458626974 25.86192907563169 24.798191660628905 46 25.075050923599658 30.232462140029583 26.819050764174268 17.873436172196495 47 19.88760510332046 25.291413946589646 35.17863472085612 19.642346229233777 48 22.58402927733327 24.099993879203954 30.2271954085489 23.088781434913873 49 19.997494743944326 21.470756117593304 36.298598053017486 22.233151085444888 50 21.061943879417473 26.730228049473116 30.204135665309177 22.003692405800237 51 18.99738513899189 28.72660396883803 25.161169100513437 27.11484179165664 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 101.0 1 270.0 2 439.0 3 5369.5 4 10300.0 5 9538.0 6 8776.0 7 8707.0 8 8638.0 9 9008.0 10 9378.0 11 9212.0 12 9046.0 13 8618.0 14 8190.0 15 7513.0 16 6836.0 17 6318.5 18 5801.0 19 5260.5 20 4720.0 21 4370.0 22 4020.0 23 4201.5 24 4383.0 25 4186.5 26 4419.5 27 4849.0 28 5244.5 29 5640.0 30 6421.5 31 7203.0 32 8649.0 33 10095.0 34 11446.5 35 12798.0 36 13438.5 37 14079.0 38 16583.5 39 19088.0 40 29033.5 41 38979.0 42 45845.0 43 52711.0 44 56943.5 45 61176.0 46 82915.5 47 104655.0 48 80216.5 49 55778.0 50 50419.0 51 45060.0 52 42794.5 53 40529.0 54 35896.5 55 31264.0 56 28433.5 57 25603.0 58 23615.0 59 21627.0 60 20142.5 61 18658.0 62 16696.0 63 14734.0 64 12740.5 65 10747.0 66 9279.5 67 7812.0 68 6462.5 69 5113.0 70 4177.0 71 3241.0 72 2932.5 73 2624.0 74 2158.0 75 1363.0 76 1034.0 77 764.0 78 494.0 79 386.0 80 278.0 81 210.0 82 142.0 83 103.0 84 64.0 85 50.5 86 37.0 87 43.5 88 50.0 89 34.0 90 18.0 91 17.0 92 16.0 93 14.5 94 13.0 95 7.5 96 2.0 97 2.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 702523.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.378959979687647 #Duplication Level Percentage of deduplicated Percentage of total 1 82.46176183342826 23.40179038925395 2 7.286319709821891 4.135563508884895 3 2.40849022679282 2.050513432728668 4 1.2636699110680523 1.4344655133494282 5 0.760691827941798 1.0793821471017864 6 0.5427478399065448 0.9241571536661852 7 0.40647255699790485 0.8074687899519394 8 0.3110741772469413 0.7062369301444166 9 0.23939446097033176 0.6114389244512347 >10 2.81389515365612 19.21114229976986 >50 1.1155695402701045 22.626618849182897 >100 0.3796922438940362 14.580841467220129 >500 0.003066155401566915 0.5479000513537527 >1k 0.005621284902872677 3.120042801700539 >5k 5.110259002611524E-4 1.277079897358694 >10k+ 0.0010220518005223049 3.485357843881614 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGC 13017 1.852893072539974 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCG 11016 1.5680625403011719 No Hit GAATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC 8806 1.2534820924012453 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4178 0.5947136250343406 No Hit GAACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCT 2195 0.31244528648884096 No Hit GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC 2035 0.28967023143726256 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTC 1956 0.27842504800554574 No Hit GATTGATACGGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGC 1896 0.2698844023612038 No Hit GAATGACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCT 1785 0.2540842079191713 No Hit GATTGATACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCG 1630 0.2320208733379548 No Hit GATTCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC 1558 0.2217720985647445 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTA 1545 0.21992162534180373 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGGTTTGTT 1379 0.19629250572579118 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1357 0.19316093565619916 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 935 0.13309172795766117 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07586940214057049 0.0 2 0.0 0.0 0.0 0.47500224191948165 0.0 3 0.0 0.0 0.0 0.5345020732417302 0.0 4 0.0 0.0 0.0 1.0213188749692181 0.0 5 0.0 0.0 0.0 2.9263098859396774 0.0 6 0.0 0.0 0.0 3.1069445413175085 0.0 7 0.0 0.0 0.0 3.5258632101724783 0.0 8 0.0 0.0 0.0 4.05324807871059 0.0 9 0.0 0.0 0.0 4.162710687052239 0.0 10 0.0 0.0 0.0 6.340005949983132 0.0 11 0.0 0.0 0.0 6.485908646407307 0.0 12 0.0 0.0 0.0 9.11471937573574 0.0 13 0.0 0.0 0.0 9.368234207278624 0.0 14 0.0 0.0 0.0 9.517126129678317 0.0 15 0.0 0.0 0.0 9.89462266715823 0.0 16 0.0 0.0 0.0 10.119526335792564 0.0 17 0.0 0.0 0.0 10.233828643332673 0.0 18 5.693763762894596E-4 0.0 0.0 10.385140415331598 1.423440940723649E-4 19 5.693763762894596E-4 0.0 0.0 10.752815210320517 1.423440940723649E-4 20 5.693763762894596E-4 0.0 0.0 10.858719216310355 1.423440940723649E-4 21 5.693763762894596E-4 0.0 0.0 10.907827928765322 1.423440940723649E-4 22 5.693763762894596E-4 0.0 0.0 11.003198471793805 1.423440940723649E-4 23 5.693763762894596E-4 0.0 0.0 11.055723442506508 1.423440940723649E-4 24 5.693763762894596E-4 0.0 0.0 11.108960133689573 1.423440940723649E-4 25 5.693763762894596E-4 0.0 0.0 11.149812888688341 1.423440940723649E-4 26 5.693763762894596E-4 0.0 0.0 11.197071127920367 1.423440940723649E-4 27 5.693763762894596E-4 0.0 0.0 11.266392701733608 1.423440940723649E-4 28 5.693763762894596E-4 0.0 0.0 11.302121069345771 1.423440940723649E-4 29 5.693763762894596E-4 0.0 0.0 11.34710180307264 1.423440940723649E-4 30 5.693763762894596E-4 0.0 0.0 11.395641139151316 1.423440940723649E-4 31 5.693763762894596E-4 0.0 0.0 11.44218765791298 1.423440940723649E-4 32 5.693763762894596E-4 0.0 0.0 11.488591832580571 1.423440940723649E-4 33 5.693763762894596E-4 0.0 0.0 11.529871619861556 1.423440940723649E-4 34 5.693763762894596E-4 0.0 0.0 11.589940827560094 1.423440940723649E-4 35 5.693763762894596E-4 0.0 0.0 11.642323454178724 1.423440940723649E-4 36 5.693763762894596E-4 0.0 0.0 11.68716184381152 1.423440940723649E-4 37 5.693763762894596E-4 0.0 0.0 11.733423674385039 1.423440940723649E-4 38 5.693763762894596E-4 0.0 0.0 11.777265655359326 1.423440940723649E-4 39 5.693763762894596E-4 0.0 0.0 11.821534668615831 1.423440940723649E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAC 30 2.1642918E-6 45.000004 6 CTGTCGA 20 7.031411E-4 45.000004 13 ATCTCGC 20 7.031411E-4 45.000004 38 GTCGCCC 20 7.031411E-4 45.000004 13 GGGTCTA 40 6.8084773E-9 45.000004 7 CGGCCTA 20 7.031411E-4 45.000004 45 CCGGCAC 20 7.031411E-4 45.000004 36 ATGTGGA 30 2.1642918E-6 45.000004 12 GCTGCGT 30 2.1642918E-6 45.000004 38 CGTCTAG 20 7.031411E-4 45.000004 30 GATCAAT 25 3.8892507E-5 45.000004 27 GAATACC 20 7.031411E-4 45.000004 27 CGACAAA 20 7.031411E-4 45.000004 43 TATGCGT 30 2.1642918E-6 45.000004 20 CGTTCGG 30 2.1642918E-6 45.000004 31 CGTTCCC 25 3.8892507E-5 45.000004 18 CTTGGTA 25 3.8892507E-5 45.000004 40 CATTAGT 25 3.8892507E-5 45.000004 25 ATGTAGT 20 7.031411E-4 45.000004 39 ATGTACT 20 7.031411E-4 45.000004 20 >>END_MODULE