##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548298_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 745393 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.749450289981258 28.0 25.0 31.0 16.0 33.0 2 27.595692473634713 30.0 25.0 31.0 16.0 33.0 3 27.525812557939236 30.0 25.0 31.0 16.0 33.0 4 30.352553619365892 33.0 28.0 35.0 19.0 37.0 5 31.684387967152897 33.0 30.0 35.0 25.0 37.0 6 30.885951437697965 33.0 30.0 35.0 17.0 37.0 7 31.65123364453382 33.0 30.0 35.0 25.0 35.0 8 33.04662775207173 35.0 32.0 35.0 28.0 37.0 9 34.19054780498341 35.0 32.0 37.0 27.0 39.0 10 33.61957249397298 35.0 32.0 38.0 27.0 39.0 11 33.73270476111259 37.0 32.0 39.0 25.0 39.0 12 33.16936434873952 35.0 31.0 37.0 23.0 39.0 13 33.294115989820135 35.0 32.0 38.0 23.0 39.0 14 33.9976670025074 36.0 32.0 39.0 23.0 40.0 15 35.113117509823674 37.0 33.0 39.0 27.0 41.0 16 35.16220570893475 37.0 33.0 39.0 27.0 41.0 17 34.72345997346366 36.0 33.0 39.0 27.0 40.0 18 34.612796202808454 36.0 33.0 39.0 27.0 40.0 19 33.93885641534063 36.0 32.0 38.0 25.0 40.0 20 33.88262970003743 35.0 32.0 38.0 27.0 40.0 21 34.19898094025568 35.0 33.0 38.0 27.0 40.0 22 34.456191566059786 35.0 33.0 39.0 27.0 40.0 23 34.89141835246642 35.0 33.0 39.0 28.0 40.0 24 34.4937261283645 35.0 33.0 39.0 27.0 40.0 25 33.71970893206671 35.0 32.0 39.0 24.0 40.0 26 33.60762711750714 35.0 32.0 39.0 23.0 40.0 27 34.112838462395004 35.0 33.0 39.0 25.0 40.0 28 34.02028191839741 35.0 33.0 39.0 24.0 40.0 29 34.04379568898554 35.0 33.0 39.0 24.0 40.0 30 33.53911963219402 35.0 32.0 39.0 23.0 40.0 31 33.52133035861619 35.0 33.0 39.0 23.0 40.0 32 32.95484261322551 35.0 31.0 39.0 19.0 40.0 33 32.77300162464633 35.0 31.0 39.0 17.0 40.0 34 32.48899842096719 35.0 31.0 39.0 15.0 40.0 35 32.4064245304155 35.0 31.0 39.0 12.0 40.0 36 32.070011389964755 35.0 31.0 39.0 10.0 40.0 37 32.075616486873365 35.0 31.0 39.0 10.0 40.0 38 31.966492843372556 35.0 31.0 39.0 10.0 40.0 39 31.744242299028834 35.0 30.0 39.0 10.0 40.0 40 31.561773453735142 35.0 30.0 39.0 10.0 40.0 41 31.253204685313655 35.0 29.0 39.0 10.0 40.0 42 31.539031088298387 35.0 30.0 39.0 10.0 40.0 43 31.47010234869391 35.0 30.0 39.0 10.0 40.0 44 31.40136008789994 35.0 30.0 39.0 10.0 40.0 45 31.442645691601612 35.0 30.0 39.0 10.0 40.0 46 31.20337996197979 35.0 29.0 39.0 10.0 40.0 47 31.29185543733306 35.0 30.0 39.0 10.0 40.0 48 31.138214337939853 35.0 29.0 38.0 10.0 40.0 49 31.248510517270756 35.0 30.0 38.0 10.0 40.0 50 31.160518008620954 35.0 29.0 39.0 10.0 40.0 51 29.28029106793329 33.0 24.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 21.0 9 50.0 10 60.0 11 42.0 12 53.0 13 83.0 14 109.0 15 306.0 16 683.0 17 1432.0 18 2662.0 19 4283.0 20 6379.0 21 8909.0 22 11606.0 23 15188.0 24 19336.0 25 23297.0 26 25246.0 27 25403.0 28 25395.0 29 27990.0 30 33891.0 31 42399.0 32 53516.0 33 66296.0 34 72352.0 35 69665.0 36 78200.0 37 77636.0 38 47950.0 39 4952.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.71549370600475 20.04016673083863 23.025705902792218 24.218633660364397 2 36.2532248089263 27.16727954246954 24.850515097404994 11.728980551199166 3 24.51458492365772 26.345833674316772 36.91716986878063 12.222411533244879 4 24.690062825918677 21.709889950670316 39.98199607455396 13.618051148857047 5 24.777399304796262 26.964165212176667 35.000328685673196 13.25810679735388 6 17.309124180130482 38.199178151659595 34.66802076220195 9.823676906007972 7 68.87132022973115 4.300952651822596 24.307580028253554 2.5201470901926903 8 67.15356865438768 9.682945774913367 19.32282701876728 3.840658551931666 9 62.70692104701815 5.84188475072881 20.591419559883175 10.859774642369864 10 41.02131358893899 21.411658011277275 26.039015660195357 11.528012739588378 11 35.764221021662394 19.640109311463885 31.105470537018725 13.490199129854991 12 30.554888495062336 18.412971412395876 34.451624847563636 16.58051524497815 13 18.529956680569846 29.940179207478472 38.09654772717211 13.433316384779573 14 15.734384411981331 33.6347403316103 34.54620582699327 16.084669429415086 15 12.896686714256775 20.63139847033712 52.99754626083153 13.474368554574568 16 13.127169157746316 21.05681164164407 45.00699630932944 20.809022891280172 17 13.316196959187973 21.101083589462203 38.883783453829054 26.698935997520774 18 17.271291788358624 22.40482537399734 40.781842598468195 19.542040239175844 19 20.68640301156571 23.878812921505837 35.86309503845622 19.57168902847223 20 23.782622053064625 21.99027895351848 38.79215393758729 15.43494505582961 21 19.168545988491978 26.22200637784363 37.318971334584575 17.290476299079817 22 17.25908346335423 21.89623460375936 36.336939037527856 24.507742895358557 23 17.00176953633855 28.28024947913383 35.083506284604226 19.634474699923395 24 18.558398053107556 22.015768862868313 39.746683964029714 19.679149119994417 25 15.07070766696226 26.973958703663705 37.86043067214207 20.09490295723196 26 14.954795658129335 27.744558910534444 36.36283141913058 20.937814012205642 27 17.294232706773474 28.85994368071608 35.10725214752487 18.738571464985583 28 13.923259273966886 25.234473626664055 42.49127641391857 18.350990685450494 29 17.56375495879355 22.729754639498896 38.46628557016232 21.24020483154524 30 15.819037742506303 26.068798606909375 38.21111816182873 19.901045488755596 31 23.16603456163393 24.29738406451362 30.978825934775344 21.557755439077102 32 23.423616803484872 26.009501028316606 31.96770026013123 18.59918190806729 33 18.234407889529418 25.407939167660547 32.11487094727211 24.242781995537925 34 20.413392666687237 27.21396632380503 31.94368608237534 20.4289549271324 35 17.710254858846273 23.785975988505392 32.882653848372605 25.621115304275733 36 24.234464235644822 23.644305755487373 31.73493714054197 20.386292868325835 37 17.6784595508678 26.8585833245013 33.666938111841674 21.796019012789227 38 17.909478624027862 27.363283529627996 30.142354435847935 24.584883410496207 39 19.652049321633015 26.798749116238014 31.473061861326844 22.076139700802127 40 20.364961838922554 23.136385772337544 34.86013418424911 21.638518204490786 41 16.913359798119917 26.655737309043687 32.13298219865226 24.297920694184143 42 21.035883084493683 23.36914889192681 33.79854653853739 21.79642148504212 43 21.964654886751017 24.637338960789812 31.048990264196203 22.349015888262972 44 19.28392136765438 26.676800023611708 31.30120620934192 22.738072399392 45 16.662217112315247 29.68018213211018 29.216668254196108 24.44093250137847 46 22.868205094493778 28.43842107452042 29.26858717481919 19.424786656166614 47 18.203417526056725 25.77056666751633 35.5230059847624 20.503009821664545 48 21.511471129994515 24.427248444780137 31.81516327628513 22.246117148940222 49 18.33676999918164 22.044881022494174 36.546224609031746 23.07212436929244 50 19.3115577956863 25.51419184242406 33.06416883442694 22.110081527462693 51 17.47990657277436 26.159489021227728 29.443796762244883 26.916807643753028 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 69.0 1 235.5 2 402.0 3 8109.5 4 15817.0 5 13452.5 6 11088.0 7 11357.5 8 11627.0 9 11981.5 10 12336.0 11 12084.5 12 11833.0 13 11205.5 14 10578.0 15 10101.0 16 9624.0 17 9048.5 18 8473.0 19 7840.5 20 7208.0 21 7032.0 22 6856.0 23 6601.0 24 6346.0 25 6063.5 26 6762.0 27 7743.0 28 8010.5 29 8278.0 30 9426.5 31 10575.0 32 12551.0 33 14527.0 34 15462.0 35 16397.0 36 17946.0 37 19495.0 38 20445.5 39 21396.0 40 29356.0 41 37316.0 42 45540.5 43 53765.0 44 56325.0 45 58885.0 46 83125.0 47 107365.0 48 83836.0 49 60307.0 50 56104.0 51 51901.0 52 43227.0 53 34553.0 54 31180.5 55 27808.0 56 26338.0 57 24868.0 58 23695.0 59 22522.0 60 21396.5 61 20271.0 62 15784.5 63 11298.0 64 9235.0 65 7172.0 66 6128.5 67 5085.0 68 3912.0 69 2739.0 70 2075.5 71 1412.0 72 1133.5 73 855.0 74 642.5 75 340.0 76 250.0 77 161.0 78 72.0 79 50.5 80 29.0 81 24.0 82 19.0 83 13.0 84 7.0 85 6.5 86 6.0 87 6.5 88 7.0 89 4.0 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 745393.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.386249202261723 #Duplication Level Percentage of deduplicated Percentage of total 1 84.9973914974315 26.677493110805873 2 7.621751250796674 4.784363682303088 3 2.350965217295985 2.2136394052770356 4 1.0469231725970194 1.3143596636301005 5 0.5907524762330568 0.9270752217951961 6 0.3799553521712479 0.715522402138794 7 0.2603101305861428 0.5719111039914978 8 0.18856074382928506 0.47345715964718205 9 0.13968429836750562 0.3945749578385051 >10 1.234910604181174 8.73566965557631 >50 0.5041259414993605 11.70874059762025 >100 0.6781278884344936 32.874783070175425 >500 0.0013082853153077046 0.30057507659620053 >1k 0.0034887608408205456 2.4530539721116145 >5k 4.360951051025682E-4 0.857788709029321 >10k+ 0.0013082853153077046 4.996992211463611 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGC 13476 1.8079053599913064 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCG 12262 1.6450382549876372 No Hit GAATCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTC 10770 1.4448753878826337 RNA PCR Primer, Index 27 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6267 0.8407645362915939 No Hit GCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGC 3653 0.4900770466049453 Illumina PCR Primer Index 6 (95% over 22bp) GAACTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCT 3130 0.41991271718408946 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTC 2704 0.3627616572734115 No Hit GAATGACTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCT 2418 0.3243926358310314 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCCCTATTT 1807 0.24242245365867404 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCCCTATTTCGTA 1689 0.22659187837825145 No Hit TGTGAGGGGATCTGTACGGGACGACATCATCCAAAACGATCTTTTTCTGTA 1318 0.17681947643726195 No Hit CTGTCTCTTATACACATCTGACGCGCCCTATTTCGTATGCCGTCTTCTGCT 1203 0.1613913734097315 RNA PCR Primer, Index 27 (96% over 25bp) GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 798 0.10705761926929822 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.68314835261399E-4 0.0 0.0 0.1927842091353152 0.0 2 2.68314835261399E-4 0.0 0.0 1.009534567671014 0.0 3 2.68314835261399E-4 0.0 0.0 1.1741457191038822 0.0 4 2.68314835261399E-4 0.0 0.0 1.858616863855711 0.0 5 2.68314835261399E-4 0.0 0.0 4.002184082759028 0.0 6 2.68314835261399E-4 0.0 0.0 4.393923742240671 0.0 7 2.68314835261399E-4 0.0 0.0 5.032244735327539 0.0 8 2.68314835261399E-4 0.0 0.0 6.131933087646383 0.0 9 2.68314835261399E-4 0.0 0.0 6.437677842426747 0.0 10 2.68314835261399E-4 0.0 0.0 8.759808584196524 0.0 11 2.68314835261399E-4 0.0 0.0 9.337892896767208 0.0 12 2.68314835261399E-4 0.0 0.0 11.991124145249552 0.0 13 2.68314835261399E-4 0.0 0.0 12.522119204231862 0.0 14 2.68314835261399E-4 0.0 0.0 12.704975764462505 0.0 15 2.68314835261399E-4 0.0 0.0 13.115631619830076 0.0 16 2.68314835261399E-4 0.0 0.0 13.523201854592141 0.0 17 2.68314835261399E-4 0.0 0.0 13.839008415694808 0.0 18 2.68314835261399E-4 0.0 0.0 14.4166902560126 0.0 19 2.68314835261399E-4 0.0 0.0 14.88664368997294 0.0 20 2.68314835261399E-4 0.0 0.0 15.164215387050858 0.0 21 2.68314835261399E-4 0.0 0.0 15.375781634654471 0.0 22 2.68314835261399E-4 0.0 0.0 15.606532392979274 0.0 23 2.68314835261399E-4 0.0 0.0 15.808573463931108 0.0 24 2.68314835261399E-4 0.0 0.0 15.979490013992619 0.0 25 2.68314835261399E-4 0.0 0.0 16.11552563547015 0.0 26 2.68314835261399E-4 0.0 0.0 16.245926645407188 0.0 27 2.68314835261399E-4 0.0 0.0 16.415501621292393 0.0 28 2.68314835261399E-4 0.0 0.0 16.545097686723647 0.0 29 2.68314835261399E-4 0.0 0.0 16.690390170017697 0.0 30 2.68314835261399E-4 0.0 0.0 16.858355256891333 0.0 31 5.36629670522798E-4 0.0 0.0 17.004855156944053 0.0 32 5.36629670522798E-4 0.0 0.0 17.14598876029155 0.0 33 6.707870881534976E-4 0.0 0.0 17.29154955842086 0.0 34 6.707870881534976E-4 0.0 0.0 17.44542811644327 0.0 35 8.049445057841971E-4 0.0 0.0 17.603599711829865 0.0 36 8.049445057841971E-4 0.0 0.0 17.75425849182914 0.0 37 8.049445057841971E-4 0.0 0.0 17.91283255946863 0.0 38 8.049445057841971E-4 0.0 0.0 18.060137404027138 0.0 39 8.049445057841971E-4 0.0 0.0 18.19872201643965 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCATAAT 35 1.2111559E-7 45.000004 30 CGGGTAG 35 1.2111559E-7 45.000004 6 GAATCCC 35 1.2111559E-7 45.000004 12 GGATCGA 65 0.0 45.000004 9 GTTAGCG 35 1.2111559E-7 45.000004 1 CGTTCTA 35 1.2111559E-7 45.000004 29 TCTAGCA 35 1.2111559E-7 45.000004 35 AGTCTAC 35 1.2111559E-7 45.000004 38 GTCCGGA 35 1.2111559E-7 45.000004 27 CGTACCT 35 1.2111559E-7 45.000004 36 ACCGTAG 35 1.2111559E-7 45.000004 1 GTCCAAT 35 1.2111559E-7 45.000004 41 TATGTAG 130 0.0 45.000004 1 TACGTAG 35 1.2111559E-7 45.000004 1 TGATCGA 20 7.03169E-4 45.0 34 TCGCCCG 20 7.03169E-4 45.0 37 AGCGTCG 25 3.889481E-5 45.0 25 TCGTTGC 20 7.03169E-4 45.0 44 TCGTTCC 25 3.889481E-5 45.0 13 GTCGCCC 25 3.889481E-5 45.0 12 >>END_MODULE