SRR3548282_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548282_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	993428
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGC	39313	3.957307424393112	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCG	30638	3.084068498169973	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTC	30058	3.025684800508945	No Hit
GAACTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCT	9457	0.9519562565178352	No Hit
GCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	9034	0.9093764218443611	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8742	0.8799832499184642	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTC	7465	0.7514384535165105	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCT	6504	0.6547027061850482	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCAAAGAGT	4698	0.47290795105432903	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTA	4336	0.43646847079003204	No Hit
CTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGCT	1929	0.19417612549676475	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGT	1844	0.18561989394299336	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTAT	1472	0.14817379820178211	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTT	1137	0.1144521797251537	No Hit
TTCGTAGGGGAAGACATACAGGAAGGTGAAGAAAAAGCTGTTAGAGAAGAT	1095	0.11022439472211373	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATG	1085	0.10921777924519946	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTT	1040	0.10468800959908518	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACCTA	25	3.8904214E-5	45.000004	44
CGCATTG	25	3.8904214E-5	45.000004	28
CGCATAC	25	3.8904214E-5	45.000004	40
ACTCTAG	25	3.8904214E-5	45.000004	11
TTACTAG	25	3.8904214E-5	45.000004	1
GTCTACC	25	3.8904214E-5	45.000004	6
ATTCCGA	25	3.8904214E-5	45.000004	44
GTTCGCC	25	3.8904214E-5	45.000004	43
AGTCTGC	65	0.0	45.000004	24
GTTCCAC	25	3.8904214E-5	45.000004	38
CCGGTCT	50	2.1827873E-11	45.000004	18
CACGTTG	25	3.8904214E-5	45.000004	31
CAATCCG	25	3.8904214E-5	45.000004	1
TAGTACG	25	3.8904214E-5	45.000004	1
TCGTTAC	20	7.032824E-4	45.0	24
GTACCGC	20	7.032824E-4	45.0	31
AGTCCCG	40	6.8139343E-9	45.0	37
ACACGTA	20	7.032824E-4	45.0	23
TACCCGC	20	7.032824E-4	45.0	28
AGTTTCG	20	7.032824E-4	45.0	37