##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548280_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 705126 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.7998258467281 28.0 25.0 31.0 16.0 33.0 2 27.701093137963994 30.0 26.0 31.0 16.0 33.0 3 27.731813888581616 30.0 26.0 31.0 16.0 33.0 4 30.716144348669598 33.0 28.0 35.0 19.0 37.0 5 32.0000879275477 33.0 32.0 35.0 26.0 37.0 6 31.223249461798318 35.0 30.0 35.0 17.0 37.0 7 32.099359547088035 35.0 32.0 35.0 26.0 35.0 8 32.891773952456724 35.0 32.0 35.0 28.0 37.0 9 34.15614372466765 35.0 32.0 37.0 28.0 39.0 10 33.790158071039784 35.0 32.0 38.0 27.0 39.0 11 34.094398731574216 37.0 32.0 39.0 27.0 39.0 12 33.63162044797667 35.0 32.0 38.0 25.0 39.0 13 33.543119953029674 35.0 32.0 38.0 25.0 39.0 14 34.50152596840848 37.0 33.0 39.0 25.0 40.0 15 35.100237404378795 37.0 33.0 39.0 27.0 41.0 16 35.273877292852625 37.0 33.0 39.0 28.0 41.0 17 34.705289551087326 36.0 33.0 39.0 27.0 40.0 18 34.541167110558966 36.0 33.0 39.0 27.0 40.0 19 33.93124633044307 36.0 32.0 38.0 25.0 40.0 20 33.522951926322385 35.0 32.0 38.0 25.0 40.0 21 34.34203674236945 35.0 33.0 39.0 27.0 40.0 22 34.644428088029656 36.0 33.0 39.0 27.0 40.0 23 34.959282454483315 36.0 33.0 39.0 28.0 40.0 24 34.78440590759666 36.0 33.0 39.0 27.0 40.0 25 34.087740347115265 35.0 33.0 39.0 25.0 40.0 26 33.88432563825472 35.0 32.0 39.0 24.0 40.0 27 34.38662735454373 36.0 33.0 39.0 25.0 40.0 28 34.099190782923905 36.0 33.0 39.0 24.0 40.0 29 34.08761980128374 36.0 33.0 39.0 24.0 40.0 30 33.5698768730695 36.0 32.0 39.0 23.0 40.0 31 33.646205075404964 36.0 33.0 39.0 23.0 40.0 32 33.06873665132189 35.0 32.0 39.0 20.0 40.0 33 32.783096921684916 35.0 31.0 39.0 18.0 40.0 34 32.541907403783156 35.0 31.0 39.0 15.0 40.0 35 32.5106902879769 36.0 31.0 39.0 15.0 40.0 36 32.26037474153556 36.0 31.0 39.0 12.0 40.0 37 32.19266627524726 36.0 31.0 39.0 10.0 40.0 38 32.00977981240232 35.0 30.0 39.0 10.0 40.0 39 31.658978678987868 35.0 30.0 39.0 10.0 40.0 40 31.086705071150405 35.0 29.0 39.0 10.0 40.0 41 30.918311053627296 35.0 28.0 39.0 9.0 40.0 42 31.007405768614404 35.0 29.0 39.0 10.0 40.0 43 31.03548727461475 35.0 29.0 39.0 10.0 40.0 44 31.168846418937893 35.0 29.0 39.0 10.0 40.0 45 31.301592906799637 35.0 30.0 39.0 10.0 40.0 46 30.859840652592585 35.0 28.0 38.0 9.0 40.0 47 30.657778893417632 35.0 28.0 38.0 9.0 40.0 48 30.637776794501974 35.0 27.0 38.0 8.0 40.0 49 30.669592384907094 35.0 28.0 38.0 8.0 40.0 50 30.52201592339525 35.0 27.0 38.0 8.0 40.0 51 27.911581759855686 32.0 22.0 36.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 13.0 9 33.0 10 50.0 11 36.0 12 28.0 13 34.0 14 77.0 15 198.0 16 479.0 17 1073.0 18 2116.0 19 3543.0 20 5468.0 21 7903.0 22 10676.0 23 13554.0 24 17226.0 25 21244.0 26 23469.0 27 24382.0 28 25505.0 29 28759.0 30 34315.0 31 42498.0 32 52342.0 33 63313.0 34 71062.0 35 70256.0 36 75206.0 37 68488.0 38 37868.0 39 3911.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.30180138017886 17.35689791611712 19.462337227672784 20.878963476031235 2 32.10149675377167 34.90255642254009 21.780929933089972 11.215016890598276 3 22.757776624319625 33.707167229686604 33.06132520996247 10.473730936031291 4 20.393660140173527 21.014400263215368 46.48814538110919 12.10379421550191 5 28.085051465979127 24.014147826062292 32.929575707036754 14.97122500092182 6 15.92764981010486 41.10045580506179 33.512024801241196 9.459869583592152 7 62.4920936116382 3.962412391544206 30.749823435811475 2.795670561006118 8 57.92638478796698 15.298542388168922 20.514205971698676 6.260866852165428 9 54.2520060244552 4.469697614327084 21.772988090071845 19.505308271145864 10 37.98711152333058 20.229575990674007 27.65193738424055 14.131375101754864 11 32.018958313833274 20.296798019077443 31.702560960736097 15.98168270635319 12 26.484628279201168 14.547612767079926 37.868125696684 21.099633257034913 13 20.325870837268802 24.410956339718005 42.75746462334391 12.50570819966928 14 16.044791994622237 32.36130847536469 33.29972231913161 18.29417721088146 15 10.59555313518435 20.243757853206375 54.48898494737111 14.671704064238163 16 12.315813060360844 21.750013472769407 40.16317651029745 25.7709969565723 17 13.030720750617618 21.31151028326852 39.139813309961625 26.517955656152232 18 15.429015523466727 21.660242282939503 38.69904102245556 24.21170117113821 19 17.872408619168773 24.77784112343042 33.99988087235472 23.349869385046077 20 20.553631549538665 21.589332970277653 41.14966686804912 16.70736861213457 21 19.1033942869785 28.690758814736654 36.0198035528402 16.186043345444645 22 15.285778711889789 20.548809716277656 38.358818140304 25.80659343152855 23 15.205509369956575 29.17407668983983 35.505143761540495 20.115270178663106 24 18.520945192774057 20.29084163681385 36.419873894878364 24.768339275533734 25 14.34623031912027 31.092457234593535 34.18552145290345 20.375790993382743 26 14.911944815536515 23.329872958875438 36.43036847315231 25.327813752435734 27 19.183805447537036 27.542027949614678 30.50022265524176 22.773943947606526 28 13.81129046439927 22.339269860989383 43.7387076919586 20.110731982652748 29 18.21220604544436 19.460068129667604 38.62940807742162 23.69831774746641 30 15.752078351954118 25.010565487586618 35.181655477177124 24.055700683282137 31 24.139940946724415 22.092647271551467 27.796308744820074 25.97110303690404 32 25.574294523248327 29.21364408630514 27.85502165570409 17.357039734742443 33 19.979975210104293 26.29671860064726 25.93153564043873 27.79177054880972 34 25.286544532466536 23.99216593913712 31.25611592821708 19.46517360017926 35 18.14938039442596 27.54429704761986 26.78329830413288 27.523024253821305 36 20.97043648936502 25.956212081245056 31.11500639602 21.958345033369923 37 21.77695901158091 23.728808751911007 31.848350507568863 22.645881728939223 38 18.558668947110164 29.729154789356794 23.74965608983359 27.962520173699453 39 29.864307939290285 23.45694244716547 27.53947521435885 19.139274399185393 40 20.199226804854735 29.565637914358568 29.335040829582233 20.900094451204467 41 21.396317821212097 28.162342616780546 26.79592016178669 23.645419400220668 42 21.235211862844373 27.508984209914257 31.458491106554003 19.797312820687367 43 22.53171773555365 27.781275970535763 26.735363608773465 22.951642685137124 44 20.542144240887446 24.191421107716916 30.362942225928414 24.90349242546722 45 19.04723411135031 24.01017690455323 28.01272396706404 28.92986501703242 46 28.120222485059408 26.551283033103303 26.06527060411898 19.263223877718307 47 17.495029257182402 22.72459106599388 38.17544665776046 21.60493301906326 48 21.54664556405522 23.9944350371423 28.899657649838467 25.559261748964012 49 18.70233121456307 19.611104965637345 38.62884080292033 23.057723016879255 50 20.834148790428944 21.5920275241588 33.458417360868836 24.115406324543414 51 18.377282925321147 21.719806105575458 28.533056503376702 31.369854465726693 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 73.0 1 257.0 2 441.0 3 6907.0 4 13373.0 5 11122.5 6 8872.0 7 9052.5 8 9233.0 9 9521.0 10 9809.0 11 9710.5 12 9612.0 13 9240.0 14 8868.0 15 8342.0 16 7816.0 17 7412.0 18 7008.0 19 6506.5 20 6005.0 21 5706.0 22 5407.0 23 5306.0 24 5205.0 25 4699.0 26 4621.5 27 5050.0 28 5444.5 29 5839.0 30 6569.0 31 7299.0 32 8204.5 33 9110.0 34 9128.0 35 9146.0 36 10718.0 37 12290.0 38 14935.5 39 17581.0 40 20532.0 41 23483.0 42 29703.5 43 35924.0 44 44798.5 45 53673.0 46 103196.0 47 152719.0 48 113648.0 49 74577.0 50 66824.0 51 59071.0 52 46233.0 53 33395.0 54 29643.5 55 25892.0 56 22972.5 57 20053.0 58 18815.5 59 17578.0 60 16863.0 61 16148.0 62 14232.5 63 12317.0 64 9902.0 65 7487.0 66 5782.5 67 4078.0 68 3428.5 69 2779.0 70 2200.5 71 1622.0 72 1215.0 73 808.0 74 728.0 75 443.5 76 239.0 77 221.5 78 204.0 79 155.0 80 106.0 81 79.5 82 53.0 83 37.5 84 22.0 85 15.5 86 9.0 87 9.0 88 9.0 89 5.5 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 705126.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.18678534095055 #Duplication Level Percentage of deduplicated Percentage of total 1 83.8944060844354 27.00291239946258 2 7.814630156306842 5.030556467199345 3 2.652676263327785 2.5614336440029875 4 1.2362933080666718 1.5916922930078248 5 0.7009092690111993 1.1280008092573017 6 0.4682160842627462 0.9042222358407258 7 0.31168056651510917 0.7022396842557375 8 0.22185429161633044 0.5712621168978779 9 0.17120423658513423 0.4959462611184326 >10 1.5380801936286337 11.184835924824496 >50 0.5838294884090418 13.644713504780068 >100 0.3950355848771064 18.04972243101649 >500 0.0031316524282443314 0.6479860144523583 >1k 0.005368547019847425 4.254100183325782 >5k 0.0013421367549618563 2.6986457548559213 >10k+ 0.0013421367549618563 9.53173027570209 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGC 25915 3.6752296752637115 No Hit GAATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTC 21182 3.004002121606635 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCG 19097 2.7083102878067185 No Hit GAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT 7695 1.0912943218658793 No Hit GCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC 5975 0.8473662863091135 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTC 5071 0.7191622490164878 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4872 0.6909403425770714 No Hit GAATGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCT 3993 0.5662817709175382 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTA 3697 0.5243034578217226 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCGAGAAT 3263 0.4627541744312364 No Hit GAATGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTT 3019 0.4281504298522533 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 2717 0.3853212050044956 No Hit GAATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTT 1703 0.24151711892626285 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGT 1516 0.21499703599073072 No Hit CTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGCT 1414 0.20053153620771322 No Hit GTGAATGATACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGC 1158 0.16422596812484577 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTAT 1157 0.16408414949952208 No Hit GTGAATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCT 1034 0.14664045858470684 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATG 827 0.11728400314270074 No Hit GAATGATACGGCGACCACCCGTCTCTTATACACATCTGACGCTCCGAGAAT 725 0.10281850335968323 No Hit CCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC 712 0.10097486123047511 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2636408244767602 0.0 2 0.0 0.0 0.0 1.6446705978789606 0.0 3 0.0 0.0 0.0 1.8823586139214836 0.0 4 0.0 0.0 0.0 3.576382093413092 0.0 5 0.0 0.0 0.0 8.245193057694653 0.0 6 0.0 0.0 0.0 9.326134619911903 0.0 7 0.0 0.0 0.0 10.629589605262039 0.0 8 0.0 0.0 0.0 12.599450311008246 0.0 9 0.0 0.0 0.0 13.084611828240627 0.0 10 0.0 0.0 0.0 17.146297257511424 0.0 11 0.0 0.0 0.0 18.095489316802954 0.0 12 0.0 0.0 0.0 23.600037440117084 0.0 13 0.0 0.0 0.0 24.641269787243697 0.0 14 0.0 0.0 0.0 25.237333469479214 0.0 15 0.0 0.0 0.0 26.121714416997815 0.0 16 0.0 0.0 0.0 26.838749386634447 0.0 17 0.0 0.0 0.0 27.352558266182214 0.0 18 0.0 0.0 0.0 28.27281932590771 0.0 19 0.0 0.0 0.0 29.09508371553453 0.0 20 0.0 0.0 0.0 29.57457248775396 0.0 21 0.0 0.0 0.0 29.88189344883042 0.0 22 0.0 0.0 0.0 30.23445455138514 0.0 23 0.0 0.0 0.0 30.491004444595717 0.0 24 0.0 0.0 0.0 30.725146995005147 0.0 25 0.0 0.0 0.0 30.895471164018915 0.0 26 0.0 0.0 0.0 31.127344616423166 0.0 27 0.0 0.0 0.0 31.322912500744547 0.0 28 0.0 0.0 0.0 31.48543664536551 0.0 29 0.0 0.0 0.0 31.650797162492946 0.0 30 0.0 0.0 0.0 31.85983781622008 0.0 31 0.0 0.0 0.0 32.061929357306354 0.0 32 0.0 0.0 0.0 32.23352989394803 0.0 33 0.0 0.0 0.0 32.433635974279774 0.0 34 0.0 0.0 0.0 32.67118217169698 0.0 35 0.0 0.0 0.0 32.871997345155336 0.0 36 0.0 0.0 0.0 33.0590561119573 0.0 37 0.0 0.0 0.0 33.2415766827489 0.0 38 0.0 0.0 0.0 33.413177219390576 0.0 39 0.0 0.0 0.0 33.60406508907628 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGTAGT 25 3.8892653E-5 45.000004 23 GTCGCTC 25 3.8892653E-5 45.000004 33 TCGTTGT 25 3.8892653E-5 45.000004 41 TCGTTAG 30 2.1643027E-6 45.000004 1 ACGCCTA 25 3.8892653E-5 45.000004 36 TCCGCGT 25 3.8892653E-5 45.000004 16 GCGACAG 30 2.1643027E-6 45.000004 1 ATCTACG 25 3.8892653E-5 45.000004 1 GTCGAAC 25 3.8892653E-5 45.000004 39 TAGACAC 25 3.8892653E-5 45.000004 11 AACTTGC 25 3.8892653E-5 45.000004 28 CGGCACG 25 3.8892653E-5 45.000004 35 TAGCGCA 30 2.1643027E-6 45.000004 30 TAGCGAG 25 3.8892653E-5 45.000004 1 GGCAACG 25 3.8892653E-5 45.000004 1 TAAGTCA 25 3.8892653E-5 45.000004 35 TCTAGTC 25 3.8892653E-5 45.000004 19 ATCAATC 25 3.8892653E-5 45.000004 35 CACCTCG 25 3.8892653E-5 45.000004 43 CACTCTA 25 3.8892653E-5 45.000004 42 >>END_MODULE