##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548270_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 639149 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.758702587346612 28.0 25.0 31.0 16.0 33.0 2 27.602476104945794 30.0 25.0 31.0 16.0 33.0 3 27.593927237623777 30.0 25.0 31.0 16.0 33.0 4 30.50767035542573 33.0 28.0 35.0 19.0 37.0 5 31.862551611596043 33.0 32.0 35.0 26.0 37.0 6 31.098003751863807 35.0 30.0 35.0 17.0 37.0 7 32.00185872151877 33.0 31.0 35.0 26.0 35.0 8 33.08431523791792 35.0 32.0 35.0 28.0 37.0 9 34.37541324479894 37.0 33.0 38.0 28.0 39.0 10 33.93380260314888 35.0 32.0 39.0 27.0 39.0 11 34.27216345484386 37.0 32.0 39.0 27.0 39.0 12 33.7126648089882 35.0 32.0 38.0 25.0 39.0 13 33.757834245222945 35.0 32.0 39.0 25.0 39.0 14 34.58977797039501 37.0 33.0 39.0 25.0 40.0 15 35.360426129118565 37.0 33.0 40.0 27.0 41.0 16 35.379903590555564 37.0 33.0 40.0 27.0 41.0 17 34.88605160924917 36.0 33.0 39.0 27.0 40.0 18 34.719678822934874 36.0 33.0 39.0 27.0 40.0 19 34.146213167821585 36.0 32.0 38.0 26.0 40.0 20 33.936096278019676 35.0 32.0 38.0 27.0 40.0 21 34.45711719802425 35.0 33.0 39.0 27.0 40.0 22 34.66622962720743 36.0 33.0 39.0 27.0 40.0 23 35.05824307008225 36.0 33.0 39.0 29.0 40.0 24 34.82210251443716 36.0 33.0 39.0 27.0 40.0 25 34.109423624225336 35.0 33.0 39.0 25.0 40.0 26 34.042138843994124 35.0 33.0 39.0 24.0 40.0 27 34.47932015852329 36.0 33.0 39.0 26.0 40.0 28 34.33293019311616 36.0 33.0 39.0 25.0 40.0 29 34.314117678350435 36.0 33.0 39.0 25.0 40.0 30 33.87062641105595 36.0 33.0 39.0 23.0 40.0 31 33.813900983964615 36.0 33.0 39.0 23.0 40.0 32 33.2666623901469 36.0 32.0 39.0 20.0 40.0 33 33.15041875994486 36.0 32.0 39.0 18.0 40.0 34 32.76727179421387 36.0 32.0 39.0 15.0 40.0 35 32.4444378384383 36.0 31.0 39.0 13.0 40.0 36 32.216221882534434 36.0 31.0 39.0 10.0 40.0 37 32.21932288089319 36.0 31.0 39.0 10.0 40.0 38 32.09337728761212 35.0 31.0 39.0 10.0 40.0 39 31.932981198437297 35.0 31.0 39.0 10.0 40.0 40 31.625361222500544 35.0 30.0 39.0 10.0 40.0 41 31.409361510383338 35.0 30.0 39.0 10.0 40.0 42 31.33773658411419 35.0 30.0 39.0 10.0 40.0 43 31.348435184909935 35.0 30.0 39.0 10.0 40.0 44 31.430355050230855 35.0 30.0 39.0 10.0 40.0 45 31.487036669070907 35.0 30.0 39.0 10.0 40.0 46 31.259994148469293 35.0 29.0 39.0 10.0 40.0 47 31.307014483320792 35.0 29.0 39.0 10.0 40.0 48 31.19690087913773 35.0 29.0 39.0 10.0 40.0 49 31.220357068539574 35.0 29.0 39.0 10.0 40.0 50 31.173091094564803 35.0 29.0 39.0 10.0 40.0 51 29.055262544414525 33.0 24.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 5.0 8 21.0 9 47.0 10 34.0 11 48.0 12 49.0 13 41.0 14 78.0 15 183.0 16 429.0 17 877.0 18 1852.0 19 3144.0 20 4632.0 21 6656.0 22 9198.0 23 12275.0 24 15726.0 25 19275.0 26 21057.0 27 21222.0 28 21502.0 29 23801.0 30 28430.0 31 35930.0 32 44858.0 33 55558.0 34 63213.0 35 63775.0 36 71067.0 37 69038.0 38 40917.0 39 4210.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.85979325634555 18.93940223641123 21.024987913616386 23.175816593626838 2 35.097449890401144 30.83334246005235 22.87432194996785 11.19488569957866 3 23.52941176470588 29.120909208963795 36.940525605140586 10.409153421189739 4 23.567118152418292 20.22908586260794 43.42414679519173 12.779649189782038 5 26.246931466684607 24.473948953999773 34.17638140715232 15.1027381721633 6 16.90388313210222 39.70044543604074 34.21377487878413 9.181896553072914 7 64.93415463373955 4.296963618811889 28.15822288699505 2.6106588604535093 8 61.856937897110065 12.081376955921076 20.9282968447107 5.133388302258159 9 58.696641941081026 4.714706586414122 21.33743462009641 15.251216852408437 10 37.508468291431264 20.374278924006763 28.40464430046828 13.712608484093694 11 30.23457753982248 20.64307383724296 32.86980031260317 16.252548310331395 12 26.268992050366975 15.009958554265124 39.32197343655392 19.399075958813984 13 19.874551943287088 23.845613464153114 42.42578804003448 13.854046552525311 14 16.066832616494743 30.590519581506033 35.10449050221467 18.238157299784557 15 12.642435488438533 20.439521926812056 52.39607665818142 14.521965926567985 16 13.800224986661952 20.59910912791853 41.67353778226986 23.927128103149656 17 14.27319764249025 19.510317625467614 40.52779555314957 25.68868917889256 18 16.242534995752163 20.9616224072947 40.81520897318153 21.98063362377161 19 19.8440426254285 24.241921680234185 35.217766123392195 20.696269570945116 20 21.243403337875833 21.52080344332855 41.773045095900954 15.462748122894663 21 19.210231104171328 27.205080505484634 37.62956681462382 15.955121575720216 22 16.409006350631856 19.3363362846535 38.592878968753766 25.661778395960877 23 15.954182827478414 28.75464093662041 36.22958027001529 19.06159596588589 24 18.72990492044891 20.524009268574307 38.49399748728387 22.252088323692913 25 15.958876568687428 27.78632212520085 36.476314599569115 19.778486706542605 26 15.240734163708305 24.98149883673447 36.11552235863625 23.662244640920974 27 19.311146540165126 27.405659713149827 33.57839877712396 19.70479496956109 28 15.332731491404978 24.187787198290227 42.53796845492992 17.94151285537488 29 18.525414261776206 24.271805165931575 36.17935723907883 21.02342333321338 30 17.788966266081932 27.980173637133127 36.07093181715062 18.159928279634325 31 26.441878184898982 23.692910416819863 29.38328934254767 20.481922055733484 32 23.11307691946635 27.23261712057752 30.188109501853244 19.466196458102882 33 23.447271293548138 23.1634564084431 28.9879198747084 24.401352423300356 34 24.51102950955098 25.79132565332966 30.317030927060827 19.380613910058532 35 17.691336448934443 24.13177521986266 33.811208341091046 24.36567999011185 36 26.06888221682268 24.649651333257193 31.09587905167653 18.1855873982436 37 20.20952860757038 26.716931419747198 32.889826941761626 20.183713030920803 38 25.559298379564076 25.556638592878965 28.12614898873346 20.7579140388235 39 24.74180511899416 22.27148912069017 29.953891815523452 23.032813944792217 40 24.408080119033276 21.806182908836593 34.08485345357655 19.700883518553578 41 21.26186538663129 23.58526728509315 32.422643233424445 22.730224094851124 42 20.637441347792144 22.666545672448834 35.92433063338908 20.77168234636994 43 22.33641920741486 22.293080330251634 32.34191088462941 23.028589577704103 44 21.630011155458273 23.51251429635343 32.408249093716805 22.44922545447149 45 19.700883518553578 24.580340421404085 29.95889847281307 25.75987758722927 46 26.877144453014868 25.095869664194108 28.701601660958552 19.32538422183247 47 18.883546716023965 22.73554366822134 38.22254278736257 20.158366828392126 48 21.11510774482945 24.08170864696651 30.651694675263514 24.151488932940516 49 19.25529101977786 19.33962190349981 39.46184692458253 21.943240152139797 50 20.911868750479154 21.152970590582164 35.00357506622087 22.931585592717816 51 19.087255084495165 22.739142203148248 29.27173475981344 28.90186795254315 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 64.0 1 196.0 2 328.0 3 7711.5 4 15095.0 5 12467.5 6 9840.0 7 9814.0 8 9788.0 9 10008.0 10 10228.0 11 10144.0 12 10060.0 13 9412.0 14 8764.0 15 8275.5 16 7787.0 17 7308.5 18 6830.0 19 6373.5 20 5917.0 21 5427.0 22 4937.0 23 4872.5 24 4808.0 25 4725.0 26 4619.0 27 4596.0 28 5386.5 29 6177.0 30 6561.5 31 6946.0 32 7496.5 33 8047.0 34 9828.0 35 11609.0 36 12493.5 37 13378.0 38 14810.0 39 16242.0 40 19738.0 41 23234.0 42 28992.5 43 34751.0 44 40785.0 45 46819.0 46 77740.5 47 108662.0 48 84522.0 49 60382.0 50 55867.0 51 51352.0 52 42910.5 53 34469.0 54 28931.0 55 23393.0 56 22445.5 57 21498.0 58 20792.5 59 20087.0 60 18182.0 61 16277.0 62 14119.0 63 11961.0 64 9872.0 65 7783.0 66 6254.0 67 4725.0 68 3927.5 69 3130.0 70 2555.0 71 1980.0 72 1575.5 73 1171.0 74 958.0 75 558.0 76 371.0 77 258.5 78 146.0 79 105.0 80 64.0 81 51.5 82 39.0 83 26.0 84 13.0 85 10.0 86 7.0 87 5.0 88 3.0 89 2.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 639149.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.191454448966 #Duplication Level Percentage of deduplicated Percentage of total 1 83.89982418984042 27.847571928733437 2 7.645028113976626 5.074992048122392 3 2.513585368413426 2.50288662777845 4 1.173551006323258 1.5580745907966649 5 0.6895319678882956 1.1443284451635125 6 0.4105233449704683 0.8175520142894672 7 0.32077294013760704 0.7452844301726795 8 0.23843308363134913 0.6331152667581139 9 0.16889854615439656 0.5045389561062211 >10 1.8994465947698391 15.215195136885526 >50 0.7176199615781311 17.227692918911984 >100 0.31461919332908206 14.16265010518096 >500 0.002882007877823652 0.7327405342993222 >1k 0.003362342524127595 3.6625866611092968 >5k 4.8033464630394207E-4 0.8714446824369223 >10k+ 0.001441003938911826 7.29934565325504 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGC 17723 2.772905848245088 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCG 14610 2.28585196878975 No Hit GAATCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTC 13451 2.1045171000815146 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5466 0.8551996482823254 No Hit GCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC 4694 0.7344140411703688 TruSeq Adapter, Index 21 (95% over 23bp) GAACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCT 4536 0.7096936708028957 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 3408 0.5332090013439745 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTC 3317 0.5189713196766325 No Hit GAATGACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCT 2916 0.4562316455161472 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTA 2066 0.32324231126075453 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGCGGTTT 2036 0.3185485700517407 No Hit CTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGCT 953 0.14910451240634032 TruSeq Adapter, Index 14 (95% over 22bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGT 853 0.1334587083762941 No Hit CCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC 850 0.13298933425539272 TruSeq Adapter, Index 21 (95% over 23bp) GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTAT 740 0.1157789498223419 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.5645804030046202E-4 0.0 0.0 0.19432088605317382 0.0 2 1.5645804030046202E-4 0.0 0.0 1.3588380800095126 0.0 3 1.5645804030046202E-4 0.0 0.0 1.5864845286466849 0.0 4 1.5645804030046202E-4 0.0 0.0 2.7053159748352886 0.0 5 1.5645804030046202E-4 0.0 0.0 5.954167181674383 0.0 6 1.5645804030046202E-4 0.0 0.0 6.5812510071986345 0.0 7 1.5645804030046202E-4 0.0 0.0 7.508108437938572 0.0 8 1.5645804030046202E-4 0.0 0.0 9.021839977845541 0.0 9 1.5645804030046202E-4 0.0 0.0 9.439739403488076 0.0 10 1.5645804030046202E-4 0.0 0.0 12.713310980694642 0.0 11 1.5645804030046202E-4 0.0 0.0 13.572422079984479 0.0 12 1.5645804030046202E-4 0.0 0.0 17.530966957626468 0.0 13 1.5645804030046202E-4 0.0 0.0 18.393363675762615 0.0 14 1.5645804030046202E-4 0.0 0.0 18.68938228801109 0.0 15 1.5645804030046202E-4 0.0 0.0 19.299881561263494 0.0 16 1.5645804030046202E-4 0.0 0.0 19.8778375621334 0.0 17 1.5645804030046202E-4 0.0 0.0 20.31498132673289 0.0 18 3.1291608060092404E-4 0.0 0.0 21.172997219740623 0.0 19 3.1291608060092404E-4 0.0 0.0 21.813379978690413 0.0 20 3.1291608060092404E-4 0.0 0.0 22.229245449809042 0.0 21 3.1291608060092404E-4 0.0 0.0 22.507114929382663 0.0 22 3.1291608060092404E-4 0.0 0.0 22.79390251725341 0.0 23 3.1291608060092404E-4 0.0 0.0 23.057221399079086 0.0 24 3.1291608060092404E-4 0.0 0.0 23.269847875847415 0.0 25 3.1291608060092404E-4 0.0 0.0 23.452121492797453 0.0 26 3.1291608060092404E-4 0.0 0.0 23.634864483868395 0.0 27 3.1291608060092404E-4 0.0 0.0 23.844831173951615 0.0 28 3.1291608060092404E-4 0.0 0.0 24.0094250323477 0.0 29 3.1291608060092404E-4 0.0 0.0 24.19592301638585 0.0 30 3.1291608060092404E-4 0.0 0.0 24.41856280773341 0.0 31 3.1291608060092404E-4 0.0 0.0 24.603809127449153 0.0 32 3.1291608060092404E-4 0.0 0.0 24.773253185094557 0.0 33 3.1291608060092404E-4 0.0 0.0 24.972424270397042 0.0 34 3.1291608060092404E-4 0.0 0.0 25.162207873281503 0.0 35 3.1291608060092404E-4 0.0 0.0 25.38547349679026 0.0 36 3.1291608060092404E-4 0.0 0.0 25.559454837604378 0.0 37 3.1291608060092404E-4 0.0 0.0 25.751585311093343 0.0 38 3.1291608060092404E-4 0.0 0.0 25.93636225668819 0.0 39 3.1291608060092404E-4 0.0 0.0 26.14945810757742 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTGCAAG 70 0.0 45.000004 1 AACGTAG 25 3.8888542E-5 45.000004 1 CTAGACC 25 3.8888542E-5 45.000004 25 CGAACTT 25 3.8888542E-5 45.000004 12 CTCAAAT 25 3.8888542E-5 45.000004 40 GGGTCTA 25 3.8888542E-5 45.000004 7 TAGACGG 25 3.8888542E-5 45.000004 2 CGTGAAT 25 3.8888542E-5 45.000004 27 GTTAGCG 25 3.8888542E-5 45.000004 1 CACGATG 25 3.8888542E-5 45.000004 42 TAGCACG 50 2.1827873E-11 45.000004 1 AGAGTAG 25 3.8888542E-5 45.000004 1 ACCTATG 25 3.8888542E-5 45.000004 34 ACTAGCC 25 3.8888542E-5 45.000004 22 CATAGTT 25 3.8888542E-5 45.000004 18 GTTCGGT 25 3.8888542E-5 45.000004 29 ACGTGTG 25 3.8888542E-5 45.000004 37 AGCGCTA 35 1.2107921E-7 45.000004 19 CGAGCTT 25 3.8888542E-5 45.000004 17 TACTCAC 25 3.8888542E-5 45.000004 30 >>END_MODULE