SRR3548266_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548266_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	668072
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGC	25962	3.886108084158594	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCG	21535	3.223454956950748	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTC	19812	2.9655486235016584	No Hit
GCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	6461	0.9671113293177981	No Hit
GAACTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCT	5934	0.888227616185082	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5018	0.7511166461100002	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTC	4812	0.7202816462896215	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCT	4404	0.659210384509454	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAAACCCAT	3317	0.4965033708941551	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAAACCCATCGTA	3075	0.4602797303284676	No Hit
CTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGCT	1684	0.25206863930833806	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAAACCCATCGT	1339	0.20042749883246117	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1264	0.189201163946401	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTAT	1068	0.15986300877749704	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTT	950	0.14220024189009567	No Hit
CCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	949	0.1420505574249482	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATG	830	0.12423810607239938	No Hit
GAATGATACGGCGACCACCCGTCTCTTATACACATCTGACGCGAAACCCAT	698	0.10447975667293345	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	35	1.2109012E-7	45.000004	1
CCTTACT	35	1.2109012E-7	45.000004	45
CGTATAT	35	1.2109012E-7	45.000004	29
AGGAGTA	35	1.2109012E-7	45.000004	5
TTAGCAA	35	1.2109012E-7	45.000004	18
TTAGATT	35	1.2109012E-7	45.000004	34
ACCGAGT	35	1.2109012E-7	45.000004	27
CGATTGT	35	1.2109012E-7	45.000004	12
CTGGTAC	35	1.2109012E-7	45.000004	42
CATTACC	35	1.2109012E-7	45.000004	31
TGCGAAG	70	0.0	45.000004	1
GGACGGA	35	1.2109012E-7	45.000004	22
ACGTATA	35	1.2109012E-7	45.000004	28
ACATACT	35	1.2109012E-7	45.000004	24
TCTATGT	35	1.2109012E-7	45.000004	27
TCACGGG	50	2.1827873E-11	45.0	3
TCCGGCC	20	7.0311624E-4	45.0	19
ATTTACG	20	7.0311624E-4	45.0	10
GTTGACA	20	7.0311624E-4	45.0	32
CTTCGCG	25	3.889046E-5	45.0	1