##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548264_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 654949 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.691313369437925 28.0 25.0 31.0 16.0 33.0 2 27.52459046429569 30.0 25.0 31.0 16.0 33.0 3 27.584216480977908 30.0 25.0 31.0 16.0 33.0 4 30.48311700605696 33.0 28.0 35.0 19.0 37.0 5 31.845833797746085 33.0 32.0 35.0 26.0 37.0 6 31.21097673253948 35.0 30.0 35.0 17.0 37.0 7 31.889438719656034 33.0 30.0 35.0 26.0 35.0 8 33.197053511036735 35.0 33.0 35.0 28.0 37.0 9 34.390212062313246 37.0 33.0 38.0 28.0 39.0 10 33.80381373206158 35.0 32.0 39.0 27.0 39.0 11 33.85094869982243 37.0 32.0 39.0 26.0 39.0 12 33.35461539753477 35.0 31.0 38.0 25.0 39.0 13 33.43240160684267 35.0 32.0 39.0 24.0 39.0 14 34.204270866891925 37.0 32.0 39.0 24.0 40.0 15 35.16862228967447 37.0 33.0 39.0 27.0 41.0 16 35.25860028796135 37.0 33.0 39.0 27.0 41.0 17 34.801708224609854 36.0 33.0 39.0 27.0 40.0 18 34.56001459655637 36.0 33.0 39.0 27.0 40.0 19 33.90029299991297 36.0 32.0 38.0 25.0 40.0 20 33.857990469486936 35.0 32.0 38.0 27.0 40.0 21 34.33731328698876 35.0 33.0 39.0 27.0 40.0 22 34.5869021862771 35.0 33.0 39.0 27.0 40.0 23 34.9567157137426 35.0 33.0 39.0 29.0 40.0 24 34.66322568627481 35.0 33.0 39.0 27.0 40.0 25 33.94481097001446 35.0 33.0 39.0 24.0 40.0 26 33.812770154622726 35.0 32.0 39.0 24.0 40.0 27 34.29146391551098 35.0 33.0 39.0 25.0 40.0 28 34.184971654281476 35.0 33.0 39.0 25.0 40.0 29 34.24099433696364 35.0 33.0 39.0 25.0 40.0 30 33.751838692783714 35.0 33.0 39.0 23.0 40.0 31 33.6292184582311 35.0 33.0 39.0 23.0 40.0 32 33.15445477434121 35.0 32.0 39.0 21.0 40.0 33 32.999992365817796 35.0 32.0 39.0 18.0 40.0 34 32.673838726374115 35.0 32.0 39.0 15.0 40.0 35 32.658152008782366 36.0 32.0 39.0 15.0 40.0 36 32.13341954869769 35.0 31.0 39.0 12.0 40.0 37 32.27281513522427 35.0 31.0 39.0 10.0 40.0 38 32.14101861366305 35.0 31.0 39.0 10.0 40.0 39 32.02592720959952 35.0 31.0 39.0 10.0 40.0 40 31.971358075208908 35.0 31.0 39.0 10.0 40.0 41 31.599993281919662 35.0 30.0 39.0 10.0 40.0 42 31.79221435562158 35.0 30.0 39.0 10.0 40.0 43 31.58539825238301 35.0 30.0 39.0 10.0 40.0 44 31.64961699307885 35.0 30.0 39.0 10.0 40.0 45 31.744048773263263 35.0 30.0 39.0 10.0 40.0 46 31.526164632666056 35.0 30.0 39.0 10.0 40.0 47 31.621132332441153 35.0 30.0 39.0 10.0 40.0 48 31.506804346597978 35.0 30.0 39.0 10.0 40.0 49 31.567670154470044 35.0 30.0 39.0 10.0 40.0 50 31.377246167258825 35.0 30.0 39.0 10.0 40.0 51 29.353488592241533 33.0 25.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 12.0 9 41.0 10 36.0 11 35.0 12 25.0 13 56.0 14 91.0 15 183.0 16 470.0 17 996.0 18 1937.0 19 3262.0 20 4856.0 21 6809.0 22 9250.0 23 12081.0 24 15910.0 25 19473.0 26 21535.0 27 21423.0 28 21610.0 29 24432.0 30 29807.0 31 37437.0 32 48394.0 33 58852.0 34 66320.0 35 63529.0 36 70899.0 37 69554.0 38 41255.0 39 4377.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.1881612156061 19.33112349205816 20.93918763140336 23.541527660932378 2 34.738430015161484 29.902633640176564 23.05553562185758 12.303400722804371 3 24.920871701460726 27.790102740824096 35.604757011614645 11.684268546100537 4 21.81864542124654 22.368459223542597 42.016248593401926 13.796646761808933 5 25.79849728757506 25.277082643076028 34.790647821433424 14.133772247915486 6 17.70214169347537 37.03570812383865 34.75675205244988 10.505398130236095 7 67.46372618326008 4.217580300145507 25.94644773867889 2.3722457779155324 8 65.55792893797837 10.637316798712572 19.468996822653367 4.3357574406556845 9 61.89245269478998 4.490120604810451 20.235010664952537 13.382416035447035 10 40.7676017521975 20.61504025504276 26.540539797755248 12.076818195004495 11 35.54643185957991 19.386394971211498 31.270984458331867 13.796188710876725 12 30.647882506882212 17.24271660846875 35.19983998754101 16.90956089710802 13 20.737950588519105 26.78010043530107 38.90318177445877 13.578767201721051 14 15.776648258108647 33.273430450309874 32.82438785310001 18.12553343848147 15 11.56838166025141 21.584886762175376 52.55874884914703 14.287982728426183 16 13.93772644892961 19.875746050455838 43.666758785798585 22.519768714815964 17 14.699617832838893 19.462278742314286 39.370393725312965 26.46770969953386 18 17.437082887369858 21.504727849038627 39.408717319974535 21.649471943616984 19 20.17561672740931 23.83284805381793 35.04181241592857 20.949722802844192 20 24.3037244121298 20.98819908114983 39.21740471395483 15.490671792765543 21 20.353798540038994 26.81277473513205 36.173045534843176 16.660381189985785 22 19.046063128579476 21.00697916937044 35.87592316348296 24.071034538567122 23 16.55777778117075 29.348392012202478 34.746216881009055 19.34761332561772 24 19.69756423782615 20.277914768936206 38.30573067521288 21.718790318024762 25 16.105070776503208 27.004850759372108 36.39596365518536 20.494114808939322 26 16.251799758454474 25.665051782657887 35.906612575941026 22.17653588294661 27 19.249132375192573 27.625051721584427 33.77530158836795 19.35051431485505 28 13.546550952822281 26.78819266843678 42.115187594759284 17.550068783981654 29 18.519151872893918 24.082485811872374 37.62995286655907 19.76840944867463 30 20.417009568683973 25.77864841384596 35.996695925942326 17.807646091527737 31 23.658483332289997 25.692534838590486 30.661318667560373 19.987663161559144 32 26.039584761561585 26.484199533093417 32.14998419724284 15.32623150810216 33 24.497327272810555 24.19501365755196 28.903624557026582 22.404034512610906 34 23.643825702459274 27.565963151329342 30.958746406208725 17.831464740002655 35 23.86674382280147 23.14225993168934 30.92958383019136 22.061412415317832 36 24.953698684935773 28.18830168455865 29.893930672464574 16.964068958041008 37 23.545039384745987 25.907055358508828 34.63613197363459 15.911773283110595 38 24.957668459681592 28.179446033202588 26.037141823256466 20.825743683859354 39 23.816358220258373 24.21852693873874 33.32503752200553 18.64007731899736 40 28.316250578289303 21.605957105057037 31.38015326384192 18.697639052811745 41 21.39220000335904 23.806586467037892 32.1176152647 22.68359826490307 42 25.316169655957943 24.22936747746771 30.656127423661992 19.79833544291235 43 24.433505509589295 23.548551108559597 29.952561191787453 22.065382190063655 44 22.488010516849403 25.754677081726975 31.304116809095063 20.453195592328562 45 19.414946812652587 26.692154656316752 29.029435879740255 24.863462651290405 46 25.756051234523603 28.010119871928957 27.99729444582708 18.236534447720356 47 20.394107022073474 24.205548828992793 36.1270877579781 19.27325639095563 48 23.560460432797058 24.224939651789683 28.381751861595326 23.83284805381793 49 20.859944820131034 21.04576081496422 35.8334771104315 22.26081725447325 50 21.285779503442253 23.72505340110451 31.76003017028807 23.229136925165164 51 19.03995578281668 24.946980604596693 28.30327246854335 27.709791144043276 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 56.0 1 210.0 2 364.0 3 7268.0 4 14172.0 5 11772.5 6 9373.0 7 9456.0 8 9539.0 9 9921.5 10 10304.0 11 10059.0 12 9814.0 13 9193.5 14 8573.0 15 8159.0 16 7745.0 17 7177.0 18 6609.0 19 6156.5 20 5704.0 21 5314.5 22 4925.0 23 4548.5 24 4172.0 25 4870.5 26 5536.5 27 5504.0 28 5909.0 29 6314.0 30 6643.0 31 6972.0 32 7732.0 33 8492.0 34 9991.0 35 11490.0 36 12225.5 37 12961.0 38 14978.0 39 16995.0 40 22277.0 41 27559.0 42 32593.5 43 37628.0 44 42664.5 45 47701.0 46 76204.5 47 104708.0 48 82033.5 49 59359.0 50 55279.5 51 51200.0 52 43668.5 53 36137.0 54 32316.0 55 28495.0 56 26596.5 57 24698.0 58 21836.5 59 18975.0 60 18329.0 61 17683.0 62 16163.5 63 14644.0 64 12124.0 65 9604.0 66 6867.0 67 4130.0 68 3500.0 69 2870.0 70 2327.5 71 1785.0 72 1357.0 73 929.0 74 798.5 75 460.5 76 253.0 77 200.0 78 147.0 79 97.0 80 47.0 81 35.0 82 23.0 83 28.5 84 34.0 85 22.0 86 10.0 87 9.5 88 9.0 89 6.0 90 3.0 91 2.0 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 654949.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.055437454173806 #Duplication Level Percentage of deduplicated Percentage of total 1 83.94983211196602 26.070987604415524 2 7.860118111898595 4.881988128129711 3 2.530101441623157 2.357202212191288 4 1.1444668764367683 1.4216767799822287 5 0.6686397472717259 1.0382449925385833 6 0.39620808265341384 0.7382649197808733 7 0.27197411078307693 0.5912392490604869 8 0.20967693112952998 0.5209287056220981 9 0.17148601377709466 0.4793015857608136 >10 1.5877577801886038 11.742711615733691 >50 0.6547943276296148 14.709707683505362 >100 0.5469163349550002 24.23019200603502 >500 0.0020070324218532123 0.4677811701894374 >1k 0.0040140648437064245 3.2593533433885615 >5k 5.017581054633031E-4 0.8437824905315799 >10k+ 0.001505274316389909 6.646637513134728 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC 15987 2.4409534177470307 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCG 14265 2.178032182658497 No Hit GAATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTC 12403 1.893735237400164 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5415 0.82678193263903 No Hit GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC 4184 0.6388283667888645 No Hit GAACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCT 3744 0.5716475633980661 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTC 2969 0.45331773924381896 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCT 2607 0.39804626009048033 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 2371 0.3620129200899612 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGATGGGTT 1958 0.29895457508905277 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTA 1947 0.2972750550042828 No Hit CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT 1137 0.17360130330758577 Illumina Single End Adapter 1 (95% over 21bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGT 851 0.12993378110356682 No Hit GAATGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTT 755 0.11527615127284721 No Hit CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC 734 0.11206979474737727 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTAT 662 0.10107657237433754 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.20490145034193502 0.0 2 0.0 0.0 0.0 1.2120027666276305 0.0 3 0.0 0.0 0.0 1.397818761460816 0.0 4 0.0 0.0 0.0 2.2435334659645254 0.0 5 0.0 0.0 0.0 4.92725387778285 0.0 6 0.0 0.0 0.0 5.421185466349288 0.0 7 0.0 0.0 0.0 6.140478113563041 0.0 8 0.0 0.0 0.0 7.364542888072201 0.0 9 0.0 0.0 0.0 7.713883065704352 0.0 10 0.0 0.0 0.0 10.68281652464543 0.0 11 0.0 0.0 0.0 11.341035714231184 0.0 12 0.0 0.0 0.0 14.703129556652502 0.0 13 0.0 0.0 0.0 15.461509216748174 0.0 14 0.0 0.0 0.0 15.740462234464058 0.0 15 0.0 0.0 0.0 16.280351599895564 0.0 16 0.0 0.0 0.0 16.783902258038413 0.0 17 0.0 0.0 0.0 17.194621260586704 0.0 18 3.0536728813999257E-4 0.0 0.0 17.903836787291834 0.0 19 3.0536728813999257E-4 0.0 0.0 18.48693562399515 0.0 20 3.0536728813999257E-4 0.0 0.0 18.813373255016803 0.0 21 3.0536728813999257E-4 0.0 0.0 19.039192364596328 0.0 22 3.0536728813999257E-4 0.0 0.0 19.2902042754474 0.0 23 3.0536728813999257E-4 0.0 0.0 19.494494991213056 0.0 24 3.0536728813999257E-4 0.0 0.0 19.68290660799543 0.0 25 3.0536728813999257E-4 0.0 0.0 19.840934179607878 0.0 26 3.0536728813999257E-4 0.0 0.0 20.003084209610215 0.0 27 3.0536728813999257E-4 0.0 0.0 20.189205571731538 0.0 28 3.0536728813999257E-4 0.0 0.0 20.333033564445476 0.0 29 3.0536728813999257E-4 0.0 0.0 20.482968902922213 0.0 30 3.0536728813999257E-4 0.0 0.0 20.67565566173855 0.0 31 3.0536728813999257E-4 0.0 0.0 20.855058943520792 0.0 32 3.0536728813999257E-4 0.0 0.0 21.0265226758114 0.0 33 3.0536728813999257E-4 0.0 0.0 21.183939512847566 0.0 34 3.0536728813999257E-4 0.0 0.0 21.35754081615515 0.0 35 3.0536728813999257E-4 0.0 0.0 21.535417261496697 0.0 36 7.634182203499814E-4 0.0 0.0 21.706728310143234 0.0 37 7.634182203499814E-4 0.0 0.0 21.878039358789767 0.0 38 7.634182203499814E-4 0.0 0.0 22.030723002859766 0.0 39 7.634182203499814E-4 0.0 0.0 22.20615650989619 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 25 3.88896E-5 45.000004 25 AGCCGTG 25 3.88896E-5 45.000004 31 CGACGGT 25 3.88896E-5 45.000004 28 CGTGCAT 35 1.2108649E-7 45.000004 9 ACCGCAT 35 1.2108649E-7 45.000004 33 CGTTGGA 25 3.88896E-5 45.000004 35 TTCGTCG 35 1.2108649E-7 45.000004 1 GTTAGCG 35 1.2108649E-7 45.000004 1 ATAGACT 35 1.2108649E-7 45.000004 34 CTGACTA 35 1.2108649E-7 45.000004 11 CGACACC 25 3.88896E-5 45.000004 38 TCGATAG 25 3.88896E-5 45.000004 1 ACGGGCC 35 1.2108649E-7 45.000004 5 AAACGTC 25 3.88896E-5 45.000004 12 ACGATAG 50 2.1827873E-11 45.000004 1 CTAACGG 25 3.88896E-5 45.000004 2 TCGGAGT 25 3.88896E-5 45.000004 41 CCGTAGA 25 3.88896E-5 45.000004 42 TCGGACC 35 1.2108649E-7 45.000004 17 TCTACCG 25 3.88896E-5 45.000004 38 >>END_MODULE