##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548263_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 430154 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.346622372452657 30.0 25.0 31.0 16.0 33.0 2 27.861830879173507 31.0 25.0 33.0 16.0 33.0 3 27.827891871283306 31.0 25.0 33.0 16.0 34.0 4 31.953181883697468 35.0 32.0 35.0 19.0 37.0 5 33.16399475536668 35.0 32.0 35.0 28.0 37.0 6 32.07447332815689 35.0 32.0 35.0 25.0 37.0 7 33.787252937320126 35.0 33.0 35.0 31.0 37.0 8 33.570665389604656 35.0 33.0 37.0 28.0 37.0 9 36.21947023624097 39.0 35.0 39.0 31.0 39.0 10 35.43331225561078 37.0 34.0 39.0 31.0 39.0 11 35.620410364660096 37.0 35.0 39.0 31.0 39.0 12 35.604292881154194 37.0 34.0 39.0 30.0 39.0 13 35.44037251774946 37.0 34.0 39.0 30.0 39.0 14 36.105469204052504 38.0 35.0 40.0 30.0 41.0 15 36.615391231977384 38.0 35.0 40.0 31.0 41.0 16 36.39109249245619 38.0 34.0 40.0 32.0 41.0 17 35.907905075856554 37.0 34.0 40.0 30.0 41.0 18 35.91944977845144 37.0 34.0 39.0 30.0 40.0 19 35.42374591425396 37.0 34.0 39.0 29.0 40.0 20 35.50051144473839 37.0 34.0 39.0 30.0 40.0 21 35.8116674493321 37.0 34.0 39.0 30.0 40.0 22 36.2061773225403 38.0 35.0 40.0 31.0 41.0 23 36.36894461053483 38.0 35.0 40.0 31.0 41.0 24 36.35526811328036 38.0 35.0 40.0 31.0 41.0 25 35.67471649688251 37.0 34.0 40.0 30.0 41.0 26 35.80391673679659 37.0 34.0 40.0 30.0 41.0 27 36.00566773760095 38.0 35.0 40.0 31.0 41.0 28 35.83586575970467 38.0 35.0 40.0 30.0 41.0 29 35.88438094263915 38.0 35.0 40.0 30.0 41.0 30 35.351206777107734 37.0 34.0 40.0 29.0 41.0 31 35.36394872534023 37.0 34.0 40.0 29.0 41.0 32 35.01481562417181 37.0 34.0 40.0 27.0 41.0 33 34.875453907205326 38.0 34.0 40.0 25.0 41.0 34 34.54381454083886 38.0 34.0 40.0 23.0 41.0 35 34.539774127405536 38.0 34.0 40.0 23.0 41.0 36 34.044077237454495 37.0 34.0 40.0 20.0 41.0 37 34.20499402539556 37.0 34.0 40.0 21.0 41.0 38 34.03823746844154 37.0 33.0 40.0 20.0 41.0 39 33.93592294852541 37.0 33.0 40.0 19.0 41.0 40 33.9808742915328 37.0 33.0 40.0 20.0 41.0 41 33.5757775122398 37.0 33.0 40.0 18.0 41.0 42 33.76905945312609 37.0 33.0 40.0 18.0 41.0 43 33.607066306485585 37.0 33.0 40.0 18.0 41.0 44 33.77681481515922 37.0 33.0 40.0 18.0 41.0 45 33.87400326394733 37.0 34.0 40.0 20.0 41.0 46 33.64226532823128 37.0 33.0 40.0 18.0 41.0 47 33.557656095258906 36.0 33.0 40.0 19.0 41.0 48 33.62761011172743 36.0 33.0 40.0 19.0 41.0 49 33.676141567903585 36.0 33.0 40.0 19.0 41.0 50 33.452286855405276 36.0 33.0 40.0 18.0 41.0 51 31.42268117929858 34.0 29.0 38.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 8.0 10 14.0 11 9.0 12 17.0 13 22.0 14 28.0 15 53.0 16 93.0 17 228.0 18 521.0 19 1042.0 20 1918.0 21 2689.0 22 3381.0 23 4167.0 24 5363.0 25 7353.0 26 9009.0 27 9430.0 28 9098.0 29 9740.0 30 11791.0 31 15946.0 32 22585.0 33 34825.0 34 44263.0 35 44464.0 36 57822.0 37 70349.0 38 53252.0 39 10673.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.40531530568122 21.227513867126657 22.67838960000372 17.688781227188404 2 33.40547803809798 29.712149602235478 23.393714809114876 13.488657550551665 3 25.651975804014377 28.99078004621601 32.304941951022194 13.052302198747427 4 22.64747044081887 23.79752367756664 38.90211412656863 14.652891755045866 5 25.928620912510404 27.276975222827172 31.607284832873805 15.187119031788615 6 18.525690799109157 37.54376339636502 31.349005239983818 12.581540564542001 7 68.825350920833 5.638213291053901 21.82660163569326 3.709834152419831 8 65.9614928606964 10.204949855168149 16.545004812230037 7.28855247190541 9 61.3257112568987 6.260083597967239 18.941588361377555 13.472616783756516 10 39.68462457631453 22.350135067905914 24.11787406370742 13.847366292072142 11 33.36340008462086 21.484166135849023 29.118176281052833 16.034257498477288 12 28.214546418259506 18.70283665849905 33.24832501848176 19.83429190475969 13 22.7448774159952 26.175741711108113 36.586199361159025 14.493181511737657 14 15.959633061647688 34.253778879192105 30.038079385522394 19.74850867363781 15 11.55818613798779 23.360005951356953 47.73383485914347 17.347973051511783 16 13.819701781222538 23.14240946265756 39.26152029273237 23.77636846338753 17 14.48434746625627 23.51832134537863 35.071625510863555 26.925705677501544 18 17.20755822333397 23.128693444673303 36.316528499095675 23.347219832897057 19 19.210096849035462 26.516084937022555 32.09966663102052 22.174151582921464 20 24.10950496798821 23.659898547961895 34.927026134826136 17.303570349223765 21 20.03608010154503 29.707732579494785 32.75710559474049 17.499081724219696 22 18.077246753488286 23.545520906466056 32.66830019016445 25.708932149881203 23 16.83071644108854 30.310772421039907 31.453618936473916 21.404892201397637 24 19.688530154316826 22.764637780887774 34.0340901165629 23.51274194823249 25 16.363441930099455 29.020304356114323 31.682374219465586 22.93387949432064 26 16.143055742826988 27.556177555015182 33.610985832980745 22.689780869177085 27 20.588672893893815 28.430050633029104 30.52929880926366 20.451977663813427 28 14.0849556205452 28.802010442771657 37.31617048777879 19.796863448904347 29 18.775368821398846 26.09739767618109 34.08174746718617 21.045486035233893 30 22.506358187997787 27.513402176894786 31.413400782045496 18.566838853061927 31 23.70546362465536 27.782143139433785 26.74646754418185 21.76592569172901 32 25.66243717366339 28.56395616453642 28.834789401005224 16.938817260794973 33 25.62570614245131 24.96175788206084 27.047290040311147 22.365245935176702 34 23.705696099536443 27.90651720081645 29.32461397545995 19.06317272418715 35 24.815531181855803 23.96513806683188 29.174435202276396 22.044895549035925 36 25.944661679305554 28.47561570972256 28.650901770063747 16.92882084090814 37 25.172612599208655 25.370448723015475 33.219033183464525 16.237905494311338 38 26.231303207688413 27.09146026771807 25.749615254071795 20.92762127052172 39 25.672433593550213 22.89761341287074 31.819999349070333 19.60995364450871 40 30.638097053613357 20.52869437457283 30.20476387526328 18.628444696550538 41 23.399759156023194 22.682341672982233 30.0806222887617 23.837276882232874 42 26.60768004017166 23.456483027008932 30.09666305555685 19.83917387726256 43 25.268857199979543 22.197166596149287 30.240565006950998 22.293411196920175 44 23.34884715706468 24.870162778911737 30.012739623483682 21.768250440539898 45 21.15963120184864 23.942355528485145 28.92777935344086 25.97023391622535 46 27.444822086973502 25.619894270424084 27.577565244075373 19.357718398527037 47 21.274241318225563 23.274687669997256 34.895642025879106 20.555428985898075 48 23.76102512123565 22.480321001315808 28.795501146101167 24.963152731347378 49 22.615388907228574 18.801173533199737 35.171124759969686 23.412312799602002 50 21.51090074717427 21.12917699242597 32.54950552592793 24.81041673447184 51 19.61530056677376 21.766158166610097 28.432375381839993 30.186165884776152 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 646.0 1 667.5 2 689.0 3 5002.0 4 9315.0 5 6362.5 6 3410.0 7 3483.5 8 3557.0 9 3743.5 10 3930.0 11 3836.5 12 3743.0 13 3656.5 14 3570.0 15 3432.5 16 3295.0 17 3131.0 18 2967.0 19 2795.0 20 2623.0 21 2629.0 22 2635.0 23 2508.0 24 2381.0 25 2843.0 26 3451.5 27 3598.0 28 4076.0 29 4554.0 30 4788.0 31 5022.0 32 5334.0 33 5646.0 34 6174.5 35 6703.0 36 7342.0 37 7981.0 38 8999.5 39 10018.0 40 13077.0 41 16136.0 42 19451.5 43 22767.0 44 26621.5 45 30476.0 46 46755.0 47 63034.0 48 57791.0 49 52548.0 50 48670.0 51 44792.0 52 37153.0 53 29514.0 54 25514.0 55 21514.0 56 19094.5 57 16675.0 58 14272.5 59 11870.0 60 11455.5 61 11041.0 62 9895.5 63 8750.0 64 7107.0 65 5464.0 66 3851.5 67 2239.0 68 1898.0 69 1557.0 70 1262.0 71 967.0 72 753.0 73 539.0 74 463.0 75 284.5 76 182.0 77 119.5 78 57.0 79 40.5 80 24.0 81 16.0 82 8.0 83 11.0 84 14.0 85 9.0 86 4.0 87 3.5 88 3.0 89 3.5 90 4.0 91 2.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 430154.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.881254802883014 #Duplication Level Percentage of deduplicated Percentage of total 1 77.96775190817381 24.857097649924576 2 9.48255436776547 6.046314639618443 3 3.687366150548658 3.5267357939150292 4 1.9187559430526773 2.44689388500034 5 1.070969694873226 1.7071928864209596 6 0.7530951734137148 1.440577146865441 7 0.4764491322123655 1.0632857329272447 8 0.3669664057525541 0.9359479588716267 9 0.27593477833090635 0.7917432279250202 >10 2.9903950589490162 22.95375304926855 >50 0.9033548454272542 19.83602999098526 >100 0.09246361537273276 4.316737505026468 >500 0.004403029303463465 0.8363956739726638 >1k 0.006604543955195197 3.543042261997768 >5k 0.002935352868975643 5.698252597280615 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCG 6663 1.5489801326966621 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC 6511 1.5136439507711192 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5627 1.3081361558883562 No Hit GAATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTC 5555 1.2913979644499411 No Hit GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC 2856 0.6639482603904648 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGATGGGTT 1888 0.4389125754962176 No Hit CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT 1874 0.4356579271609703 Illumina Single End Adapter 1 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCT 1704 0.39613719737582354 No Hit CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC 1567 0.3642881386666171 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCT 1450 0.3370885775791926 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTC 1412 0.32825453209780686 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 1211 0.28152708099889806 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTA 1182 0.2747853094473142 No Hit TCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC 663 0.15413084616207218 No Hit GAATGATCCGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC 656 0.1525035219944485 No Hit GAATGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTT 611 0.14204215234543907 No Hit ACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC 574 0.13344058174514242 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 561 0.13041840829098417 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGT 510 0.11856218935544015 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4874998256438392 0.0 2 0.0 0.0 0.0 1.96464522008397 0.0 3 0.0 0.0 0.0 2.53699837732533 0.0 4 0.0 0.0 0.0 3.6254457705844882 0.0 5 0.0 0.0 0.0 6.725033360145436 0.0 6 0.0 0.0 0.0 8.062693825932108 0.0 7 0.0 0.0 0.0 9.256452340324628 0.0 8 0.0 0.0 0.0 11.609563086708482 0.0 9 0.0 0.0 0.0 12.373475545967258 0.0 10 0.0 0.0 0.0 15.730412828893838 0.0 11 0.0 0.0 0.0 17.50675339529564 0.0 12 0.0 0.0 0.0 20.946916685652116 0.0 13 0.0 0.0 0.0 21.80405157222762 0.0 14 0.0 0.0 0.0 22.163457738391365 0.0 15 0.0 0.0 0.0 22.9176062526444 0.0 16 0.0 0.0 0.0 23.876100187374753 0.0 17 0.0 0.0 0.0 24.7920512188658 0.0 18 0.0 0.0 0.0 26.28314510617128 0.0 19 0.0 0.0 0.0 27.410880754334496 0.0 20 0.0 0.0 0.0 28.076223864011492 0.0 21 0.0 0.0 0.0 28.654388893280082 0.0 22 0.0 0.0 0.0 29.225347201234907 0.0 23 0.0 0.0 0.0 29.732142442009142 0.0 24 0.0 0.0 0.0 30.143855456417935 0.0 25 0.0 0.0 0.0 30.51116576853871 0.0 26 0.0 0.0 0.0 30.860343039934534 0.0 27 0.0 0.0 0.0 31.231140475271648 0.0 28 0.0 0.0 0.0 31.563347080347967 0.0 29 0.0 0.0 0.0 31.894158836137755 0.0 30 0.0 0.0 0.0 32.278672289459124 0.0 31 0.0 0.0 0.0 32.65202694848821 0.0 32 0.0 0.0 0.0 32.98795315166196 0.0 33 0.0 0.0 0.0 33.309233437327094 0.0 34 0.0 0.0 0.0 33.61400800643491 0.0 35 0.0 0.0 0.0 33.960395579257664 0.0 36 0.0 0.0 0.0 34.28493051325804 0.0 37 0.0 0.0 0.0 34.647591327757034 0.0 38 0.0 0.0 0.0 34.942369476978016 0.0 39 0.0 0.0 0.0 35.29805604504433 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCCG 160 0.0 45.000004 4 TTTAGCG 20 7.028358E-4 45.000004 1 AAGTAAC 20 7.028358E-4 45.000004 21 TAGAGAT 20 7.028358E-4 45.000004 28 CTCACTA 20 7.028358E-4 45.000004 16 ACCGGGA 20 7.028358E-4 45.000004 4 CAAAAGT 20 7.028358E-4 45.000004 42 CGACGGT 20 7.028358E-4 45.000004 28 ACCATGC 20 7.028358E-4 45.000004 23 TTTCGTC 20 7.028358E-4 45.000004 15 CGTTGTG 20 7.028358E-4 45.000004 18 GACAATT 20 7.028358E-4 45.000004 25 TAGGTAA 20 7.028358E-4 45.000004 41 CGCATGT 20 7.028358E-4 45.000004 38 GACGTAA 20 7.028358E-4 45.000004 25 ATCAGGC 20 7.028358E-4 45.000004 17 GAACTAA 20 7.028358E-4 45.000004 24 TGGAAGT 20 7.028358E-4 45.000004 25 GGACTAA 20 7.028358E-4 45.000004 8 GGGTACG 20 7.028358E-4 45.000004 7 >>END_MODULE