##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548254_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 695369 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.830721530583045 28.0 25.0 31.0 16.0 33.0 2 27.742788361287317 30.0 26.0 31.0 16.0 33.0 3 27.709211943586787 30.0 26.0 31.0 16.0 33.0 4 30.803062834264974 33.0 28.0 35.0 19.0 37.0 5 32.02530598861899 33.0 32.0 35.0 26.0 37.0 6 31.34299487034941 35.0 30.0 35.0 18.0 37.0 7 32.0466629947553 35.0 31.0 35.0 26.0 35.0 8 32.849639543896835 35.0 32.0 35.0 28.0 37.0 9 34.17285786395425 35.0 33.0 37.0 28.0 39.0 10 33.69042623412893 35.0 32.0 37.0 27.0 39.0 11 33.84612342511674 35.0 32.0 39.0 27.0 39.0 12 33.31812462160378 35.0 31.0 37.0 25.0 39.0 13 33.256620585617135 35.0 31.0 38.0 24.0 39.0 14 34.15021377139332 36.0 32.0 39.0 24.0 40.0 15 34.830974633611795 37.0 32.0 39.0 27.0 40.0 16 35.077230937818626 36.0 33.0 39.0 27.0 41.0 17 34.4837690492386 36.0 32.0 39.0 27.0 40.0 18 34.39742496429953 36.0 32.0 39.0 27.0 40.0 19 33.7263150931376 36.0 32.0 38.0 25.0 40.0 20 33.29328313456596 35.0 31.0 38.0 25.0 40.0 21 34.23551093016801 35.0 33.0 38.0 27.0 40.0 22 34.56133793712403 36.0 33.0 39.0 27.0 40.0 23 34.79394105863218 35.0 33.0 39.0 28.0 40.0 24 34.61603120070063 36.0 33.0 39.0 27.0 40.0 25 33.92255622554356 35.0 33.0 39.0 24.0 40.0 26 33.83599355162511 35.0 32.0 39.0 24.0 40.0 27 34.1741391980373 35.0 33.0 39.0 25.0 40.0 28 33.979294446545644 35.0 33.0 39.0 24.0 40.0 29 33.91688873101907 35.0 33.0 39.0 24.0 40.0 30 33.606578665427996 35.0 32.0 39.0 23.0 40.0 31 33.48827169459668 35.0 32.0 39.0 23.0 40.0 32 33.084553668627734 35.0 32.0 39.0 20.0 40.0 33 32.882800354919475 35.0 31.0 39.0 18.0 40.0 34 32.75290097775426 35.0 32.0 39.0 15.0 40.0 35 32.602743291691176 36.0 31.0 39.0 15.0 40.0 36 32.386840655824464 36.0 31.0 39.0 12.0 40.0 37 32.39219752390458 36.0 31.0 40.0 12.0 40.0 38 32.078408729753555 35.0 31.0 39.0 10.0 40.0 39 32.04552546921131 35.0 31.0 39.0 10.0 40.0 40 31.830872529549058 35.0 30.0 39.0 10.0 40.0 41 31.40744554330147 35.0 30.0 39.0 10.0 40.0 42 31.658318101612238 35.0 30.0 39.0 10.0 40.0 43 31.63454079776349 35.0 30.0 39.0 10.0 40.0 44 31.757702744873583 35.0 30.0 39.0 10.0 40.0 45 31.675227109635316 35.0 30.0 39.0 10.0 40.0 46 31.413222332315648 35.0 30.0 39.0 10.0 40.0 47 31.47483134853581 35.0 30.0 39.0 10.0 40.0 48 31.368077955732854 35.0 30.0 38.0 10.0 40.0 49 31.522079644045103 35.0 30.0 39.0 10.0 40.0 50 31.31272748713273 35.0 29.0 38.0 10.0 40.0 51 28.989251749790398 33.0 24.0 36.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 12.0 9 28.0 10 29.0 11 33.0 12 29.0 13 54.0 14 90.0 15 218.0 16 531.0 17 1136.0 18 2272.0 19 3769.0 20 5479.0 21 7532.0 22 10094.0 23 12884.0 24 16211.0 25 19967.0 26 22232.0 27 22578.0 28 23780.0 29 26380.0 30 32548.0 31 41172.0 32 52344.0 33 64019.0 34 70987.0 35 69248.0 36 76300.0 37 71107.0 38 38961.0 39 3343.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.53932947830576 16.682078148436297 19.060815193084537 20.717777180173407 2 30.90920072652074 37.03314355399795 21.361751818099457 10.695903901381856 3 21.092110807355517 36.23543758781309 32.73916438610292 9.933287218728474 4 20.41966207869491 19.910436041871293 47.745729245911164 11.924172633522634 5 30.21000360959433 23.003613908586665 31.984313364558957 14.802069117260045 6 16.166812152972017 42.66152215586257 31.700866734064938 9.470798957100476 7 60.188763088374664 5.204431028705622 32.06355186958291 2.543254013336804 8 56.31053440691202 16.826893347273174 20.63968914346196 6.222883102352852 9 53.524675388175204 4.38486616458312 20.4853825810469 21.605075866194785 10 41.27132500873637 17.675219919208363 27.324916698903746 13.728538373151522 11 35.3576302653699 18.77851903090302 30.895251298231585 14.9685994054955 12 29.480175273847408 13.818850135683356 35.83449938090424 20.866475209564996 13 19.311904902289285 26.162943703271214 42.09923076812455 12.42592062631495 14 15.804270825993106 34.14144145051045 31.257648816671434 18.79663890682501 15 10.47947205009139 19.241870143765397 55.80576643479937 14.472891371343849 16 11.76612704909192 19.790787337370517 40.547536631630116 27.895548981907446 17 12.037206145226492 19.76188182101877 40.52970437278625 27.671207660968495 18 14.343607494725822 21.880037792884067 39.747385920281175 24.028968792108937 19 18.25131692669647 24.92518360755225 33.607480344967925 23.216019120783354 20 20.850224844650825 21.233043175637683 41.9948257687645 15.921906210946993 21 17.810256137388926 30.303622968524625 36.030078994030504 15.856041900055942 22 15.246149885887924 20.22753387050616 36.45201324764262 28.074302995963297 23 15.024253310113048 31.470485454485313 34.34838193822273 19.156879297178907 24 18.958567321810435 20.030084746372072 36.19215121755499 24.8191967142625 25 13.454151680618493 31.765292959565354 33.854399606539836 20.92615575327632 26 15.803407974758727 22.66652669302198 36.445398054845704 25.084667277373597 27 19.299537367929833 28.654139025467057 29.902397144537645 22.143926462065462 28 14.171181056388765 25.797094779893843 42.88183683770775 17.149887326009644 29 24.60463437397986 18.341772497767373 33.70383206614042 23.349761062112346 30 15.439284753850114 26.812383065681672 34.87198882895269 22.876343351515526 31 24.73578776160571 25.640487280853762 27.390061967099484 22.233662990441047 32 29.611328661473262 27.25171815252046 26.106139330341154 17.030813855665123 33 18.824969189020504 22.07374789500251 27.104170591441378 31.997112324535603 34 25.750500813237288 24.62519899506593 31.601207416493978 18.023092775202805 35 17.18281948145517 23.725964200302286 28.43037293868435 30.660843379558187 36 27.261209516098646 23.101259906610736 29.725081215872436 19.912449361418183 37 21.990626559423845 22.168805339323438 33.13693880515237 22.703629296100345 38 18.774492391809243 30.48395887651017 23.908601044912846 26.832947686767746 39 27.17463677558246 21.27273433241919 33.52809803140491 18.02453086059344 40 19.916763617590085 24.3818749469706 29.976314733616256 25.72504670182306 41 15.939882278329923 22.870015775796734 36.92571857531757 24.264383370555777 42 21.107929746652495 25.884961797261596 32.677039097227514 20.330069358858392 43 23.74408407622428 20.54175552835976 31.66548983345533 24.048670561960627 44 20.293829607014406 22.91042597527356 32.80186490913458 23.99387950857746 45 18.03330318147631 24.286961311188733 29.57609556940272 28.103639937932236 46 28.40664452973889 26.724516048313916 26.54533060864088 18.323508813306315 47 16.482184279138128 21.10836117226969 40.950488158085854 21.458966390506333 48 21.554886686061643 23.685697809364527 29.662380692840777 25.09703481173305 49 17.98800349167133 18.157122333609927 40.33153620595684 23.523337968761908 50 22.441753946465834 20.844041077471097 32.81940955090031 23.894795425162755 51 19.031478251115594 22.08884779160417 26.392318323077387 32.48735563420285 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 105.0 1 211.0 2 317.0 3 6757.5 4 13198.0 5 11139.0 6 9080.0 7 9114.5 8 9149.0 9 9534.5 10 9920.0 11 9740.0 12 9560.0 13 8989.0 14 8418.0 15 7927.0 16 7436.0 17 7057.0 18 6678.0 19 6301.0 20 5924.0 21 5450.5 22 4977.0 23 4769.0 24 4561.0 25 4513.0 26 4801.5 27 5138.0 28 4871.0 29 4604.0 30 5209.5 31 5815.0 32 6715.0 33 7615.0 34 8174.0 35 8733.0 36 9181.5 37 9630.0 38 11948.5 39 14267.0 40 19825.0 41 25383.0 42 30803.5 43 36224.0 44 43637.0 45 51050.0 46 107100.0 47 163150.0 48 115936.0 49 68722.0 50 62117.0 51 55512.0 52 44312.0 53 33112.0 54 29908.5 55 26705.0 56 24810.0 57 22915.0 58 20507.5 59 18100.0 60 16606.0 61 15112.0 62 13676.0 63 12240.0 64 9389.0 65 6538.0 66 5488.5 67 4439.0 68 3419.0 69 2399.0 70 1966.0 71 1533.0 72 1446.0 73 1359.0 74 1014.5 75 458.5 76 247.0 77 218.5 78 190.0 79 145.5 80 101.0 81 81.0 82 61.0 83 36.5 84 12.0 85 7.5 86 3.0 87 2.5 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 695369.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.72502926603 #Duplication Level Percentage of deduplicated Percentage of total 1 83.95142511278823 24.95458568402556 2 7.750625777016615 4.607751561037308 3 2.5774857557607134 2.29847518568288 4 1.2914630804355476 1.5355511144777565 5 0.6683630348763735 0.9933555386016417 6 0.46780061983376275 0.8343232269135343 7 0.31269544004032634 0.650641677458698 8 0.21141607779786323 0.5027479279880609 9 0.17520453751165435 0.46871640045676594 >10 1.5268508175529711 10.31306454821278 >50 0.5811919339697692 12.706180555440227 >100 0.4741302619226993 20.491502588751416 >500 0.004440345845269817 0.9459241064472369 >1k 0.0029602305635132112 2.1219497513465226 >5k 0.002466858802927676 4.7112886697081375 >10k+ 0.0014801152817566056 11.863941463451491 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGC 30343 4.363582500801733 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCG 26571 3.8211366914544653 No Hit GAATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTC 23983 3.4489601923583018 No Hit GCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC 8116 1.1671501030388183 No Hit GAACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCT 7564 1.0877677894758035 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTC 6004 0.8634264685368489 No Hit GAATGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCT 5227 0.7516872336845617 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5214 0.7498177226767372 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCAGCTATT 4016 0.5775350928787449 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTA 3605 0.5184297833236742 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 2412 0.34686619622099923 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGT 1575 0.2264984490249062 No Hit CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT 1516 0.21801374522016367 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTAT 1345 0.19342248504031673 No Hit GAATGATACGGCGACCACCCGTCTCTTATACACATCTGACGCGCAGCTATT 984 0.1415076024384176 No Hit GAATGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTT 936 0.13460479256337282 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATG 871 0.12525723752424972 No Hit CCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC 759 0.10915068114914526 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.438085390634325E-4 0.0 0.0 0.25698585930635387 0.0 2 1.438085390634325E-4 0.0 0.0 1.879577605559063 0.0 3 1.438085390634325E-4 0.0 0.0 2.0919828177557527 0.0 4 1.438085390634325E-4 0.0 0.0 3.532225336476029 0.0 5 1.438085390634325E-4 0.0 0.0 8.020202223567631 0.0 6 1.438085390634325E-4 0.0 0.0 8.60924199957145 0.0 7 1.438085390634325E-4 0.0 0.0 9.813638514227698 0.0 8 1.438085390634325E-4 0.0 0.0 11.726435892310414 0.0 9 1.438085390634325E-4 0.0 0.0 12.247310420798167 0.0 10 1.438085390634325E-4 0.0 0.0 17.229557256650786 0.0 11 1.438085390634325E-4 0.0 0.0 18.00482909074175 0.0 12 1.438085390634325E-4 0.0 0.0 23.799737980841826 0.0 13 1.438085390634325E-4 0.0 0.0 24.781375068488817 0.0 14 1.438085390634325E-4 0.0 0.0 25.244294755734007 0.0 15 1.438085390634325E-4 0.0 0.0 26.092621327669196 0.0 16 2.87617078126865E-4 0.0 0.0 26.881554972971184 0.0 17 2.87617078126865E-4 0.0 0.0 27.32793667822408 0.0 18 8.628512343805951E-4 0.0 0.0 28.203011638425068 0.0 19 8.628512343805951E-4 0.0 0.0 29.168973595314142 0.0 20 8.628512343805951E-4 0.0 0.0 29.603419191824774 0.0 21 0.0010066597734440276 0.0 0.0 29.830205257927805 0.0 22 0.0010066597734440276 0.0 0.0 30.10272243945301 0.0 23 0.0010066597734440276 0.0 0.0 30.34992931810305 0.0 24 0.0010066597734440276 0.0 0.0 30.515021520947872 0.0 25 0.0010066597734440276 0.0 0.0 30.653221526987828 0.0 26 0.0010066597734440276 0.0 0.0 30.790558681793406 0.0 27 0.0010066597734440276 0.0 0.0 30.9805297618962 0.0 28 0.0010066597734440276 0.0 0.0 31.12160593871743 0.0 29 0.0012942768515708926 0.0 0.0 31.25894309352301 0.0 30 0.0012942768515708926 0.0 0.0 31.428637169617858 0.0 31 0.0012942768515708926 0.0 0.0 31.58495705157981 0.0 32 0.0012942768515708926 0.0 0.0 31.72574561132291 0.0 33 0.0012942768515708926 0.0 0.0 31.871423661394168 0.0 34 0.0012942768515708926 0.0 0.0 32.02242262741077 0.0 35 0.0012942768515708926 0.0 0.0 32.18061202038054 0.0 36 0.0012942768515708926 0.0 0.0 32.31277206777984 0.0 37 0.0012942768515708926 0.0 0.0 32.46031962885892 0.0 38 0.0012942768515708926 0.0 0.0 32.59434918726604 0.0 39 0.0012942768515708926 0.0 0.0 32.7309672993763 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACCGA 30 2.164259E-6 45.000004 15 TTGTGCA 30 2.164259E-6 45.000004 32 CAAGTAA 30 2.164259E-6 45.000004 13 GTCTCAC 85 0.0 45.000004 22 ACCGAGT 30 2.164259E-6 45.000004 30 GTCTAGC 30 2.164259E-6 45.000004 33 ATGAGTT 30 2.164259E-6 45.000004 28 CTAAACT 30 2.164259E-6 45.000004 44 ACGTGTG 30 2.164259E-6 45.000004 3 TTTATCG 30 2.164259E-6 45.000004 23 CTACATC 30 2.164259E-6 45.000004 45 CGTAAGA 30 2.164259E-6 45.000004 14 CCAACCG 30 2.164259E-6 45.000004 4 TGAGCGA 30 2.164259E-6 45.000004 14 CTGATAG 60 0.0 45.000004 1 TATCGCC 30 2.164259E-6 45.000004 25 TTCGAAA 30 2.164259E-6 45.000004 37 TAATGTA 30 2.164259E-6 45.000004 14 GCGTAAG 65 0.0 45.000004 1 CTAATGT 30 2.164259E-6 45.000004 13 >>END_MODULE