##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548251_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 504650 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.404973744179134 30.0 25.0 31.0 16.0 33.0 2 27.795392846527296 30.0 25.0 31.0 16.0 33.0 3 27.590205092638463 30.0 25.0 31.0 16.0 34.0 4 31.955357178242345 35.0 32.0 35.0 19.0 37.0 5 33.061967700386404 35.0 32.0 35.0 28.0 37.0 6 31.960537005845637 35.0 32.0 35.0 25.0 37.0 7 33.54581194887546 35.0 33.0 35.0 30.0 37.0 8 32.923130882790055 35.0 33.0 35.0 27.0 37.0 9 35.57520261567423 37.0 34.0 39.0 30.0 39.0 10 35.0696720499356 37.0 34.0 39.0 30.0 39.0 11 35.48384821163182 37.0 35.0 39.0 30.0 39.0 12 35.50673734271277 37.0 34.0 39.0 30.0 39.0 13 35.2330526107203 37.0 34.0 39.0 30.0 39.0 14 35.898628752600814 38.0 34.0 40.0 29.0 41.0 15 36.300126820568714 38.0 34.0 40.0 30.0 41.0 16 36.15234518973546 37.0 34.0 40.0 31.0 41.0 17 35.522451203804614 37.0 34.0 39.0 29.0 41.0 18 35.62489051818092 37.0 34.0 39.0 30.0 40.0 19 35.16836223124938 37.0 34.0 39.0 28.0 40.0 20 34.81567621123551 36.0 33.0 39.0 27.0 40.0 21 35.339710690577625 37.0 34.0 39.0 30.0 40.0 22 35.83078767462598 37.0 34.0 40.0 30.0 40.0 23 35.941464381254335 37.0 34.0 40.0 30.0 41.0 24 35.90467056375706 37.0 34.0 40.0 30.0 41.0 25 35.322706826513425 37.0 34.0 40.0 29.0 41.0 26 35.4088873476667 37.0 34.0 40.0 29.0 41.0 27 35.50327950064401 37.0 34.0 40.0 29.0 41.0 28 35.22466263747152 37.0 34.0 40.0 27.0 41.0 29 35.21008421678391 37.0 34.0 40.0 27.0 41.0 30 34.595535519667095 37.0 33.0 40.0 25.0 41.0 31 34.78942435351234 37.0 34.0 40.0 25.0 41.0 32 34.26624987615179 37.0 33.0 40.0 24.0 40.0 33 33.8512553254731 37.0 33.0 40.0 21.0 41.0 34 33.71947092043991 37.0 33.0 40.0 19.0 41.0 35 33.6144516001189 37.0 33.0 40.0 18.0 41.0 36 33.330383434063215 37.0 33.0 40.0 15.0 41.0 37 33.614320816407414 37.0 33.0 40.0 17.0 41.0 38 33.16291489150897 37.0 32.0 40.0 15.0 41.0 39 33.12432577033588 37.0 32.0 40.0 15.0 41.0 40 32.79505796096304 36.0 31.0 40.0 15.0 41.0 41 32.45193302288715 36.0 31.0 39.0 14.0 40.0 42 32.78776974140494 36.0 32.0 40.0 14.0 41.0 43 32.9199147924304 36.0 33.0 40.0 14.0 40.0 44 33.17054592291687 37.0 33.0 40.0 15.0 41.0 45 33.24009907856931 37.0 33.0 40.0 15.0 41.0 46 32.91573962151987 36.0 32.0 40.0 15.0 40.0 47 32.69414247498266 36.0 32.0 39.0 15.0 40.0 48 32.860998711978596 36.0 32.0 40.0 15.0 40.0 49 32.927942138115526 36.0 32.0 40.0 13.0 40.0 50 32.79528782324383 36.0 32.0 40.0 12.0 40.0 51 30.835254136530267 34.0 28.0 38.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 5.0 10 16.0 11 22.0 12 22.0 13 24.0 14 36.0 15 60.0 16 150.0 17 333.0 18 788.0 19 1697.0 20 3082.0 21 4397.0 22 5748.0 23 6548.0 24 7905.0 25 9880.0 26 11674.0 27 12220.0 28 11947.0 29 12766.0 30 15833.0 31 21207.0 32 29424.0 33 42163.0 34 53327.0 35 56151.0 36 69042.0 37 72430.0 38 47375.0 39 8377.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.367977806400475 18.311106707619142 20.719706727434854 16.60120875854553 2 29.08431586247894 37.80838204696324 20.823739225205586 12.283562865352224 3 21.6569899930645 38.26870107995641 29.117011790349746 10.957297136629347 4 19.583275537501237 21.659764193005053 45.70771822054889 13.049242048944812 5 31.21291984543743 24.206479738432577 28.584365401763602 15.996235014366391 6 16.117903497473495 41.79887050430992 30.07351629842465 12.009709699791934 7 60.1906271673437 5.31814128603983 30.17655801050233 4.314673536114139 8 54.923412265926885 16.012285742593875 19.11522837610225 9.949073615376994 9 50.815416625383925 6.401466362825721 21.467749925691074 21.315367086099275 10 38.31705142177747 20.345982364014663 25.59873179431289 15.738234419894978 11 31.50757951055187 20.9238085802041 30.781729911820072 16.786881997423958 12 24.240364609135042 15.815912018230458 35.83374616070544 24.10997721192906 13 21.54701278113544 24.48568314673536 40.926582780144656 13.040721291984545 14 14.45932824730011 36.2631526800753 30.389775091647675 18.887743980976914 15 9.637966907757852 21.450510254631926 51.32705835727732 17.584464480332905 16 10.23124938075894 24.53918557416031 36.98761517883682 28.24194986624393 17 10.382245120380462 26.449618547508173 35.69384722084613 27.474289111265232 18 13.980976914693352 23.74259387694442 36.61309818686218 25.663331021500053 19 15.84444664619043 27.806796789854353 31.734865748538592 24.613890815416624 20 19.905677202021202 24.232240166451994 37.8438521747746 18.018230456752203 21 16.035866442088576 33.14633904686416 33.60507282274844 17.21272168829882 22 13.483206182502725 21.766174576439116 36.239968294857825 28.51065094620034 23 14.767264440701478 31.787179233131873 32.04795402754384 21.397602298622807 24 17.90230853066482 23.48181908253245 33.39780045576142 25.218071931041315 25 12.936094322797977 33.04290102050926 30.335876349945508 23.68512830674725 26 12.97057366491628 25.0325968493015 34.54968790250669 27.447141583275535 27 19.992866343010007 28.027147527989694 27.352026156742298 24.627959972258 28 14.4101852769246 25.997423957198055 37.038145249182605 22.554245516694742 29 17.85732686020014 20.305360150599423 31.49291588229466 30.344397106905774 30 17.416030912513623 28.15178836817596 30.19439215297731 24.2377885663331 31 26.483899732487863 22.940651936986033 24.529277717229764 26.046170613296344 32 27.77945110472605 29.549985138214602 22.681264242544337 19.98929951451501 33 20.223124938075895 28.107203011988506 24.29505597939166 27.37461607054394 34 22.503120974933122 24.065590012880214 29.683741206776975 23.747547805409692 35 17.784008718914098 27.985138214604184 25.331814128603984 28.899038937877737 36 22.37947092043991 29.38690181313782 24.773803626275637 23.459823640146638 37 20.98860596452987 24.216783909640345 31.794114732983253 23.000495392846528 38 23.879520459724564 30.236599623501437 21.435846626374715 24.448033290399287 39 27.277915386901814 24.362033092242147 28.69057762805905 19.669473892796987 40 21.02229267809373 28.508273060537004 29.525611810165458 20.943822451203804 41 16.67928267115823 28.244525909045876 29.328445457247597 25.7477459625483 42 22.30179332210443 25.754879619538297 30.19637372436342 21.746953333993858 43 23.539680967006838 26.149014168235414 25.208758545526607 25.102546319231152 44 21.379966313286435 22.510452789061727 29.54106806697711 26.568512830674724 45 19.628257207965916 21.2650351728921 27.87575547409095 31.230952145051027 46 28.559793916575842 25.51451501040325 25.371049242048944 20.554641830971963 47 16.449816704646786 22.08778361240464 38.10086198355296 23.361537699395623 48 20.26117110868919 22.886555038145246 29.457049440206085 27.39522441295948 49 19.65441395026256 18.82690973942336 37.32071732884177 24.197958981472308 50 20.097493312196573 20.423065490934313 33.569206380659864 25.910234816209254 51 17.727137620132766 19.81650648964629 28.104825126325178 34.351530763895774 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 655.0 1 703.5 2 752.0 3 5151.5 4 9551.0 5 6643.5 6 3736.0 7 3850.0 8 3964.0 9 4177.0 10 4390.0 11 4475.5 12 4561.0 13 4476.5 14 4392.0 15 4270.5 16 4149.0 17 3920.5 18 3692.0 19 3534.0 20 3376.0 21 3257.5 22 3139.0 23 3120.0 24 3101.0 25 2995.0 26 3442.0 27 3995.0 28 4346.0 29 4697.0 30 5788.5 31 6880.0 32 7198.5 33 7517.0 34 7600.0 35 7683.0 36 7778.5 37 7874.0 38 9029.5 39 10185.0 40 13237.5 41 16290.0 42 20762.0 43 25234.0 44 29541.0 45 33848.0 46 71541.5 47 109235.0 48 87027.0 49 64819.0 50 57389.0 51 49959.0 52 40450.0 53 30941.0 54 25922.0 55 20903.0 56 18069.5 57 15236.0 58 13686.5 59 12137.0 60 10602.0 61 9067.0 62 7687.5 63 6308.0 64 5256.5 65 4205.0 66 3084.0 67 1963.0 68 1633.0 69 1303.0 70 1056.0 71 809.0 72 649.5 73 490.0 74 407.5 75 238.5 76 152.0 77 136.5 78 121.0 79 102.5 80 84.0 81 56.0 82 28.0 83 18.5 84 9.0 85 5.0 86 1.0 87 1.5 88 2.0 89 1.5 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 504650.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.951066271516115 #Duplication Level Percentage of deduplicated Percentage of total 1 79.12186619499685 25.28027990322375 2 9.179536742734014 5.865919736178233 3 3.607913874186338 3.4583008588815045 4 1.7809141963302855 2.276084300433313 5 1.0948454373217986 1.7490739562467918 6 0.7358661394664511 1.4107024673434378 7 0.5171712022097014 1.1566919948865282 8 0.3625233925526636 0.9266407152340004 9 0.2769898707953416 0.796510954648858 >10 2.5082459344405135 18.31277392399162 >50 0.698270478220862 15.354616942847638 >100 0.10082649954579265 4.853081034335804 >500 0.0050100123997909385 1.0955149114780458 >1k 0.006262515499738673 5.12500884523967 >5k 0.001878754649921602 3.345372384475151 >10k+ 0.001878754649921602 8.993427070555663 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTC 16126 3.195482017239671 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGC 14748 2.9224214802338255 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCG 14072 2.7884672545328444 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6133 1.215297731100763 No Hit GAACTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCT 5323 1.054790448825919 No Hit GCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGC 5263 1.0429010205092637 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTC 4386 0.8691172099474884 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCGGATAAT 4148 0.8219558109580898 No Hit GAATGACTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCT 3588 0.7109878133359755 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCGGATAATCGTA 3051 0.6045774299019122 No Hit GAATGCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTT 3030 0.6004161299910828 No Hit CTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGCT 2305 0.45675220449816706 No Hit GAATGATCCGGCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGC 1407 0.27880709402556225 No Hit CCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGC 1363 0.2700881799266819 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCCGGATAATCGT 1231 0.24393143763004063 No Hit TCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGC 1104 0.21876548102645396 No Hit GAATGATCCCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCG 949 0.18805112454176162 No Hit ACTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGC 828 0.1640741107698405 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCCGGATAATCGTAT 773 0.15317546814623997 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATG 663 0.13137818289903894 No Hit TTGATGCGGGATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTAT 594 0.11770534033488556 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCCGGATAA 568 0.11255325473100168 No Hit TTGTTGGGGACTCTTAAAATGTAGTTTCAGTTTGTAAAGACCAAATTCCAA 567 0.11235509759239078 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 533 0.10561775487961952 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5027246606559002 0.0 2 0.0 0.0 0.0 2.4288120479540276 0.0 3 0.0 0.0 0.0 3.0468641632814824 0.0 4 0.0 0.0 0.0 5.112454176161696 0.0 5 0.0 0.0 0.0 10.594075101555534 0.0 6 0.0 0.0 0.0 12.72287724165263 0.0 7 0.0 0.0 0.0 14.492024175170911 0.0 8 0.0 0.0 0.0 17.662934707222828 0.0 9 0.0 0.0 0.0 18.50906568909145 0.0 10 0.0 0.0 0.0 23.242247101951847 0.0 11 0.0 0.0 0.0 25.140592489844447 0.0 12 0.0 0.0 0.0 30.58218567323888 0.0 13 0.0 0.0 0.0 31.818488061032397 0.0 14 0.0 0.0 0.0 32.40245714851878 0.0 15 1.9815713861091845E-4 0.0 0.0 33.57198058060042 0.0 16 3.963142772218369E-4 0.0 0.0 34.6642227286238 0.0 17 3.963142772218369E-4 0.0 0.0 35.56504508074904 0.0 18 0.0011889428316655107 0.0 0.0 37.0325968493015 0.0 19 0.0011889428316655107 0.0 0.0 38.596849301496086 0.0 20 0.0011889428316655107 0.0 0.0 39.36748241355395 0.0 21 0.0013870999702764292 0.0 0.0 39.94392152977311 0.0 22 0.0013870999702764292 0.0 0.0 40.55979391657584 0.0 23 0.0013870999702764292 0.0 0.0 41.127315961557514 0.0 24 0.0013870999702764292 0.0 0.0 41.518478153175465 0.0 25 0.0013870999702764292 0.0 0.0 41.83790746061627 0.0 26 0.0013870999702764292 0.0 0.0 42.20093133855147 0.0 27 0.0013870999702764292 0.0 0.0 42.55028237392252 0.0 28 0.0013870999702764292 0.0 0.0 42.845338353314176 0.0 29 0.0013870999702764292 0.0 0.0 43.12275834736946 0.0 30 0.0013870999702764292 0.0 0.0 43.47765778262162 0.0 31 0.0023778856633310213 0.0 0.0 43.79906866144853 0.0 32 0.0023778856633310213 0.0 0.0 44.08837808382047 0.0 33 0.0023778856633310213 0.0 0.0 44.39472902011295 0.0 34 0.0023778856633310213 0.0 0.0 44.69255919944516 0.0 35 0.0023778856633310213 0.0 0.0 44.99217279302487 0.0 36 0.0023778856633310213 0.0 0.0 45.259288615872386 0.0 37 0.00257604280194194 0.0 0.0 45.52580996730407 0.0 38 0.00257604280194194 0.0 0.0 45.76082433369662 0.0 39 0.00257604280194194 0.0 0.0 46.053502427424945 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 20 7.0295203E-4 45.000004 25 AGACTGC 20 7.0295203E-4 45.000004 13 CGGCGAA 40 6.8012014E-9 45.000004 31 CTCACGA 20 7.0295203E-4 45.000004 24 AGATCCG 20 7.0295203E-4 45.000004 17 CTGTACG 20 7.0295203E-4 45.000004 1 CGCGGTT 20 7.0295203E-4 45.000004 18 TAAAGCG 20 7.0295203E-4 45.000004 1 AACCCTA 20 7.0295203E-4 45.000004 18 AGCCCTT 20 7.0295203E-4 45.000004 17 TCCGAGT 20 7.0295203E-4 45.000004 15 TGGACCG 20 7.0295203E-4 45.000004 45 CGTGATT 20 7.0295203E-4 45.000004 23 GATCCAT 20 7.0295203E-4 45.000004 11 GCAAACA 40 6.8012014E-9 45.000004 33 TTCGTAC 40 6.8012014E-9 45.000004 33 GTTAGAA 20 7.0295203E-4 45.000004 9 TTACTAG 40 6.8012014E-9 45.000004 1 ATGTCGC 20 7.0295203E-4 45.000004 34 GTAGCAA 20 7.0295203E-4 45.000004 26 >>END_MODULE