SRR3548248_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548248_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1178109
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGC	44329	3.7627248412498338	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCG	39840	3.381690488740855	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTC	35358	3.001250308757509	No Hit
GCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGC	11119	0.9438006160720273	TruSeq Adapter, Index 23 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCT	9847	0.8358309799857229	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9224	0.782949625204459	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTC	8234	0.6989166537221938	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCT	7523	0.6385657014758397	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCACTACTCGTA	5337	0.453014109899848	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCACTACT	5193	0.4407911322297003	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTCACTACTCGT	2230	0.18928639030853683	No Hit
CTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGCT	1823	0.15473950203249445	TruSeq Adapter, Index 20 (95% over 23bp)
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCTCACTACTCGTAT	1787	0.15168375761495753	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1557	0.13216094605847167	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTT	1468	0.12460646680400542	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGACAT	25	3.890865E-5	45.0	16
CTTAACG	20	7.033359E-4	45.0	16
CGTGGTA	20	7.033359E-4	45.0	45
CGGGTGA	75	0.0	45.0	6
GTACCGA	25	3.890865E-5	45.0	14
ACCGGTA	20	7.033359E-4	45.0	42
TACCCGA	20	7.033359E-4	45.0	29
GCGACTA	25	3.890865E-5	45.0	11
TCCGCGA	20	7.033359E-4	45.0	21
GTCGATG	35	1.2119563E-7	45.0	1
CACGGTC	20	7.033359E-4	45.0	4
CGACGTG	20	7.033359E-4	45.0	11
CGTGCGC	25	3.890865E-5	45.0	32
GCGAAGT	20	7.033359E-4	45.0	45
CCGGCAT	25	3.890865E-5	45.0	12
ACACCGA	25	3.890865E-5	45.0	27
CGTGACG	20	7.033359E-4	45.0	24
GACGTAC	20	7.033359E-4	45.0	41
TAGCGCG	45	3.8562575E-10	45.0	1
GGTCCGT	25	3.890865E-5	45.0	29