##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548243_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 453896 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.62867925692229 30.0 25.0 31.0 16.0 33.0 2 27.93167377549042 31.0 26.0 33.0 16.0 33.0 3 27.906709907115285 31.0 25.0 33.0 16.0 34.0 4 31.965699191004106 35.0 32.0 35.0 19.0 37.0 5 33.073730546204416 35.0 32.0 35.0 28.0 37.0 6 32.001641345153956 35.0 32.0 35.0 25.0 37.0 7 33.64722755873592 35.0 33.0 35.0 30.0 37.0 8 33.194090716816184 35.0 33.0 37.0 28.0 37.0 9 35.87216675185505 37.0 35.0 39.0 31.0 39.0 10 35.2564728484058 37.0 34.0 39.0 30.0 39.0 11 35.54167694802334 37.0 35.0 39.0 30.0 39.0 12 35.46419444101733 37.0 34.0 39.0 30.0 39.0 13 35.21465269577172 37.0 34.0 39.0 30.0 39.0 14 35.89011800059926 38.0 34.0 40.0 27.0 41.0 15 36.35479933729312 38.0 34.0 40.0 30.0 41.0 16 36.18619683804219 37.0 34.0 40.0 31.0 41.0 17 35.61101441739958 37.0 34.0 39.0 30.0 41.0 18 35.68810256093907 37.0 34.0 39.0 30.0 40.0 19 35.173229109752015 37.0 34.0 39.0 28.0 40.0 20 34.93023511993937 36.0 34.0 39.0 27.0 40.0 21 35.47956360047235 37.0 34.0 39.0 30.0 40.0 22 35.910770308616954 37.0 34.0 40.0 30.0 41.0 23 36.036766131448616 37.0 34.0 40.0 31.0 41.0 24 35.990618996422086 37.0 35.0 40.0 30.0 41.0 25 35.39162054743818 37.0 34.0 40.0 29.0 41.0 26 35.5078828630347 37.0 34.0 40.0 29.0 41.0 27 35.59401713167774 37.0 34.0 40.0 30.0 41.0 28 35.403220120908756 37.0 34.0 40.0 29.0 41.0 29 35.47833644711564 37.0 34.0 40.0 29.0 41.0 30 34.90896813366939 37.0 34.0 40.0 26.0 41.0 31 34.98638234309181 37.0 34.0 40.0 27.0 41.0 32 34.5709788145302 37.0 34.0 40.0 25.0 41.0 33 34.44262342034298 37.0 33.0 40.0 24.0 41.0 34 34.184835292666165 37.0 34.0 40.0 22.0 41.0 35 34.07245492359483 37.0 33.0 40.0 21.0 41.0 36 33.7181711229004 37.0 33.0 40.0 18.0 41.0 37 33.846057246593936 37.0 33.0 40.0 18.0 41.0 38 33.52030200750833 37.0 33.0 40.0 18.0 41.0 39 33.53358919223787 37.0 33.0 40.0 18.0 41.0 40 33.29601274300721 36.0 33.0 40.0 18.0 41.0 41 32.90055651514884 36.0 32.0 40.0 15.0 41.0 42 33.137577771119375 36.0 33.0 40.0 15.0 41.0 43 33.200277156000496 36.0 33.0 40.0 15.0 41.0 44 33.34643398487759 36.0 33.0 40.0 17.0 41.0 45 33.41690607540053 36.0 33.0 40.0 18.0 41.0 46 33.143466785342895 36.0 33.0 40.0 17.0 40.0 47 32.977464000564005 35.0 32.0 39.0 18.0 41.0 48 33.08709263796112 36.0 33.0 39.0 18.0 40.0 49 33.156159120150875 36.0 33.0 40.0 18.0 40.0 50 33.00725276274741 35.0 32.0 40.0 17.0 40.0 51 30.991760227012357 34.0 29.0 38.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 12.0 10 17.0 11 20.0 12 15.0 13 17.0 14 35.0 15 49.0 16 125.0 17 301.0 18 682.0 19 1482.0 20 2568.0 21 3425.0 22 4506.0 23 5130.0 24 6382.0 25 8108.0 26 9989.0 27 10436.0 28 10236.0 29 11179.0 30 13781.0 31 18217.0 32 25884.0 33 38631.0 34 48875.0 35 49526.0 36 59347.0 37 67962.0 38 48374.0 39 8584.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.16690166910482 20.02397024869133 23.143847929922273 17.66528015228158 2 31.496642402664925 34.10627104006204 22.631836367802315 11.765250189470716 3 23.06695806968997 32.997426723302254 31.852230466891097 12.08338474011668 4 21.64130109099882 21.61155859492042 43.63224174700812 13.114898567072633 5 29.621543261011336 24.744875478083085 30.44463930063274 15.188941960272837 6 17.487045490596962 40.70051289282126 30.084204311119727 11.728237305462045 7 64.00452967199534 5.485838165570968 26.743350899765584 3.7662812626681004 8 60.358099652783906 13.840615471385515 17.656247246065178 8.145037629765408 9 56.309154519978144 5.974936989971271 19.488825634065954 18.22708285598463 10 41.13783774256658 19.162980065918184 24.589994183689655 15.10918800782558 11 32.91568993778311 20.648562666337664 29.542890882492905 16.892856513386327 12 26.55960836843682 15.49914517863123 35.103195445652744 22.8380510072792 13 22.3482912385216 25.20268960290463 38.930503903978 13.518515254595767 14 14.572501189699844 34.73549006820946 31.15449354037048 19.53751520172022 15 10.962863739711299 21.349383999858997 49.39259213564341 18.295160124786296 16 11.75379382061089 22.430909283183816 38.469164742584205 27.346132153621095 17 12.259856883515166 24.928177379840317 35.65993090928318 27.152034827361334 18 15.223311066852318 23.25246311930486 36.29135308528826 25.232872728554558 19 17.72168073743765 26.85945679186422 31.314662389622296 24.10420008107584 20 20.437721416359693 24.6245836050549 36.782214427974694 18.15548055061071 21 17.356398822637782 31.655709677987907 33.68436822532034 17.30352327405397 22 14.696538414086046 22.52696652977775 34.778671766219574 27.997823289916635 23 15.922810511659058 30.796482013500892 31.052267479775104 22.22843999506495 24 18.796816891975254 24.256657912825847 33.19593034527733 23.75059484992157 25 14.415857377020286 31.758376368154817 30.872049985018595 22.9537162698063 26 16.562824964309005 25.710515184095033 34.31557008653965 23.41108976505631 27 21.80367308810829 27.325642878544866 29.29063045279095 21.580053580555898 28 14.73619507552391 26.394592593898164 38.635502405837464 20.23370992474047 29 22.67832278759892 19.860496677653032 33.59139538572713 23.869785149020924 30 21.892239631986183 27.06523080176957 33.00139238944604 18.04113717679821 31 24.04846044027707 23.85854909494686 28.044750339284768 24.0482401254913 32 25.789608192184993 27.699737384775368 25.716463683310714 20.794190739728926 33 22.915822126654565 23.61223716446058 28.243914905617146 25.228025803267705 34 26.398337945256184 23.507147011650247 28.839866401113913 21.25464864197966 35 22.856998078855067 25.805470856760138 26.473024657630823 24.864506406753968 36 26.468838676701274 24.59902708990606 30.4287766360576 18.50335759733507 37 23.694634894337028 23.819994007437828 31.906868533761042 20.578502564464106 38 19.706937271974198 26.276503868727634 30.887031390450677 23.12952746884749 39 25.048248938082736 24.12028306043675 27.513791705588947 23.31767629589157 40 22.68052593545658 24.55099846660909 32.21024199376068 20.558233604173644 41 21.230854645116942 27.566006309815467 26.644870190528223 24.558268854539367 42 23.096920880554137 26.579436699155757 29.95664205016127 20.367000370128842 43 24.252251617110527 24.864065777182436 28.000907696917356 22.88277490878968 44 22.807206937271975 23.12996809841902 30.557881100516415 23.504943863792587 45 20.455126284435202 22.96649452738072 28.607874931702415 27.97050425648166 46 27.13991751414421 25.494827008830217 27.588478417963586 19.77677705906199 47 18.36742337451751 23.20906110650898 36.91220015157658 21.511315367396936 48 22.0504256481661 23.277799319667942 29.331168373371874 25.340606658794083 49 19.972196274036342 19.31543789766819 36.02961911979837 24.6827467084971 50 20.267638401748417 21.23856566261875 33.407652854398364 25.086143081234468 51 19.573646826585826 21.817112290040008 27.412887533708165 31.196353349666 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 657.0 1 648.0 2 639.0 3 5925.5 4 11212.0 5 7357.5 6 3503.0 7 3580.0 8 3657.0 9 4119.5 10 4582.0 11 4858.5 12 5135.0 13 4932.5 14 4730.0 15 4457.5 16 4185.0 17 3990.0 18 3795.0 19 3502.0 20 3209.0 21 3108.0 22 3007.0 23 2870.5 24 2734.0 25 2674.5 26 2923.0 27 3231.0 28 3394.5 29 3558.0 30 3858.0 31 4158.0 32 4409.0 33 4660.0 34 5044.0 35 5428.0 36 5929.5 37 6431.0 38 7407.0 39 8383.0 40 11121.5 41 13860.0 42 18181.0 43 22502.0 44 27546.5 45 32591.0 46 58309.0 47 84027.0 48 70432.5 49 56838.0 50 51292.0 51 45746.0 52 37400.0 53 29054.0 54 24686.0 55 20318.0 56 18069.0 57 15820.0 58 14652.5 59 13485.0 60 11658.5 61 9832.0 62 8476.5 63 7121.0 64 6045.0 65 4969.0 66 3853.0 67 2737.0 68 2339.5 69 1942.0 70 1632.5 71 1323.0 72 1163.0 73 1003.0 74 804.5 75 466.5 76 327.0 77 249.0 78 171.0 79 117.5 80 64.0 81 51.5 82 39.0 83 22.0 84 5.0 85 3.0 86 1.0 87 1.0 88 1.0 89 1.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 453896.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.688746324728704 #Duplication Level Percentage of deduplicated Percentage of total 1 78.60438785785348 24.908745068381037 2 9.194488100006069 5.827236019736583 3 3.5332520660647604 3.358929852685493 4 1.7758835067684424 2.251020877930192 5 1.1253767065876177 1.783088848740683 6 0.7600892276787399 1.445176483204233 7 0.5536391057503592 1.228089042430095 8 0.37403303082885686 0.9482110264804061 9 0.29272587333101585 0.8348504348404105 >10 2.903842292876946 22.12913199571009 >50 0.7849510971082458 16.778379089898337 >100 0.08262643127455219 3.7914721088288426 >500 0.004201343963112824 0.8742552881597494 >1k 0.00770246393237351 5.197381120448175 >5k 7.002239938521372E-4 1.7447384088325149 >10k+ 0.002100671981556412 6.899294333693169 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCG 10673 2.3514197084794755 No Hit GAATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTC 10277 2.264175053316178 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGC 10143 2.2346528720235472 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7863 1.7323351604772899 No Hit GCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC 3101 0.6831961506600631 No Hit GAACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCT 3072 0.6768070218728519 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTCTGAAT 2908 0.640675397007244 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTC 2743 0.60432345735587 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCT 2637 0.5809700900646845 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTA 1945 0.42851225831468004 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 1756 0.38687276380492447 No Hit CCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC 1566 0.34501295450940306 No Hit CTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGCT 1411 0.3108641627156882 No Hit GAATGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTT 1282 0.28244355535188675 No Hit GAATGATCCGGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGC 1002 0.22075541533743415 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGT 800 0.17625182861272184 No Hit TCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC 772 0.1700830146112766 No Hit GAATGATCCCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCG 705 0.15532192396496114 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 591 0.13020603838764827 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCC 552 0.12161376174277808 No Hit ACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC 520 0.11456368859826922 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTAT 465 0.10244637538114458 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.33642067786453284 0.0 2 0.0 0.0 0.0 1.8138516312106738 0.0 3 0.0 0.0 0.0 2.3201350089007176 0.0 4 0.0 0.0 0.0 3.7803814089571177 0.0 5 0.0 0.0 0.0 7.907317975924 0.0 6 0.0 0.0 0.0 9.474196732291098 0.0 7 0.0 0.0 0.0 11.049227135731533 0.0 8 0.0 0.0 0.0 13.836649805241729 0.0 9 0.0 0.0 0.0 14.714824541304615 0.0 10 0.0 0.0 0.0 19.027927102243687 0.0 11 0.0 0.0 0.0 21.115630012161375 0.0 12 2.2031478576590231E-4 0.0 0.0 25.492623860972557 0.0 13 2.2031478576590231E-4 0.0 0.0 26.487785748277137 0.0 14 2.2031478576590231E-4 0.0 0.0 26.90484163773199 0.0 15 2.2031478576590231E-4 0.0 0.0 27.78830392865326 0.0 16 2.2031478576590231E-4 0.0 0.0 28.75989213388089 0.0 17 2.2031478576590231E-4 0.0 0.0 29.5829881735023 0.0 18 2.2031478576590231E-4 0.0 0.0 30.89430177838095 0.0 19 2.2031478576590231E-4 0.0 0.0 32.20231066147311 0.0 20 2.2031478576590231E-4 0.0 0.0 32.84342668805189 0.0 21 2.2031478576590231E-4 0.0 0.0 33.32833953152264 0.0 22 2.2031478576590231E-4 0.0 0.0 33.87207642279289 0.0 23 2.2031478576590231E-4 0.0 0.0 34.31645134568271 0.0 24 2.2031478576590231E-4 0.0 0.0 34.64934698697499 0.0 25 2.2031478576590231E-4 0.0 0.0 34.92474046918237 0.0 26 2.2031478576590231E-4 0.0 0.0 35.21026843153498 0.0 27 2.2031478576590231E-4 0.0 0.0 35.52465763082292 0.0 28 2.2031478576590231E-4 0.0 0.0 35.794763558171915 0.0 29 2.2031478576590231E-4 0.0 0.0 36.06244602287749 0.0 30 2.2031478576590231E-4 0.0 0.0 36.35722720623227 0.0 31 4.4062957153180463E-4 0.0 0.0 36.623808097009004 0.0 32 4.4062957153180463E-4 0.0 0.0 36.86218869520771 0.0 33 4.4062957153180463E-4 0.0 0.0 37.10277244126408 0.0 34 4.4062957153180463E-4 0.0 0.0 37.356354759680634 0.0 35 4.4062957153180463E-4 0.0 0.0 37.6136824294552 0.0 36 4.4062957153180463E-4 0.0 0.0 37.8353191039357 0.0 37 4.4062957153180463E-4 0.0 0.0 38.06907309163333 0.0 38 4.4062957153180463E-4 0.0 0.0 38.291591025256885 0.0 39 4.4062957153180463E-4 0.0 0.0 38.51344801452315 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGTATG 30 2.1625874E-6 45.000004 1 TCGTTGA 35 1.2097553E-7 45.000004 24 GTACCAC 20 7.0287695E-4 45.000004 33 TCGCAGA 30 2.1625874E-6 45.000004 26 AGATCCA 30 2.1625874E-6 45.000004 17 CGAACCC 20 7.0287695E-4 45.000004 34 ATTAGTG 20 7.0287695E-4 45.000004 1 CTACTTG 20 7.0287695E-4 45.000004 22 GGTAATC 20 7.0287695E-4 45.000004 8 GTACATC 20 7.0287695E-4 45.000004 36 TACTTAA 30 2.1625874E-6 45.000004 18 ATCTAAC 20 7.0287695E-4 45.000004 21 GTCGAAA 40 6.7993824E-9 45.000004 27 TACCAGG 20 7.0287695E-4 45.000004 2 AAATAGG 20 7.0287695E-4 45.000004 2 CGCATGT 20 7.0287695E-4 45.000004 13 GAGTAGT 20 7.0287695E-4 45.000004 31 CGTTGAT 35 1.2097553E-7 45.000004 25 CCTACTC 20 7.0287695E-4 45.000004 10 CGCGCCT 30 2.1625874E-6 45.000004 17 >>END_MODULE