SRR3548242_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548242_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	637924
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10239	1.6050501313636107	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGC	2434	0.38155015330979863	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCG	2268	0.35552824474388794	No Hit
GCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	2231	0.349728180786426	No Hit
CTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGCT	2069	0.3243333061618625	TruSeq Adapter, Index 13 (95% over 23bp)
GAATCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTC	1903	0.2983113975959519	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1423	0.22306732463428244	No Hit
CCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	1409	0.22087270583956709	No Hit
TCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	1026	0.16083420595556838	No Hit
ACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	842	0.1319906446535951	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCC	730	0.11443369429587223	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	728	0.11412017732519862	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	25	3.8888462E-5	45.000004	1
CGTATGG	35	1.2107921E-7	45.000004	2
ATTAGCG	25	3.8888462E-5	45.000004	1
GTACACT	50	2.1827873E-11	45.000004	18
GACACCC	35	1.2107921E-7	45.000004	9
CCGGATA	35	1.2107921E-7	45.000004	44
GTCTCGA	35	1.2107921E-7	45.000004	21
ACATTAC	25	3.8888462E-5	45.000004	15
CACCTAA	25	3.8888462E-5	45.000004	41
ACGGCAT	25	3.8888462E-5	45.000004	40
TATCTAG	50	2.1827873E-11	45.000004	1
CTTGCGG	35	1.2107921E-7	45.000004	2
TCTCGAC	35	1.2107921E-7	45.000004	22
CCATACC	25	3.8888462E-5	45.000004	32
GGAACGA	25	3.8888462E-5	45.000004	8
GTCCGAC	25	3.8888462E-5	45.000004	26
AGTTATG	35	1.2107921E-7	45.000004	1
TATAGTG	35	1.2107921E-7	45.000004	18
CCGAACT	25	3.8888462E-5	45.000004	12
GGACCGT	25	3.8888462E-5	45.000004	8