SRR3548239_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548239_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	822751
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11367	1.381584464801623	No Hit
CTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGCT	6112	0.7428736033137608	No Hit
GCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	6038	0.7338793875668337	No Hit
CCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	3301	0.40121494838657135	No Hit
TCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	3027	0.3679120414317333	No Hit
ACTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	2287	0.2779698839624625	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGC	2251	0.27359431954503854	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCG	2223	0.270191102775931	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTC	1966	0.23895443457376533	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCC	1538	0.18693383538883576	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1412	0.1716193599278518	No Hit
AGCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTG	1194	0.1451228865112288	No Hit
AAAACTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTC	1111	0.13503477965994573	No Hit
ACCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTG	912	0.11084763190807424	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	30	2.1647465E-6	45.000004	25
GTCGATG	30	2.1647465E-6	45.000004	1
GTTAGCG	30	2.1647465E-6	45.000004	1
ATCCGAG	30	2.1647465E-6	45.000004	31
GTCCCGA	30	2.1647465E-6	45.000004	38
CGACTGG	30	2.1647465E-6	45.000004	2
GTCGACC	20	7.032116E-4	45.0	10
CTCCGCC	25	3.889836E-5	45.0	45
GCACGAG	20	7.032116E-4	45.0	1
CACGATA	20	7.032116E-4	45.0	19
CACGACA	25	3.889836E-5	45.0	34
AGTATCG	20	7.032116E-4	45.0	1
ATATCCG	20	7.032116E-4	45.0	12
GCATTAT	20	7.032116E-4	45.0	9
TACGCGG	20	7.032116E-4	45.0	2
CACTAGG	25	3.889836E-5	45.0	2
GGAACGA	20	7.032116E-4	45.0	8
ACTACGG	25	3.889836E-5	45.0	2
CGAATTA	20	7.032116E-4	45.0	15
AGCGATC	20	7.032116E-4	45.0	38